Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq37735 199 4e-46 seq15031 197 2e-45 >seq37735 Length=758 Score = 199 bits (220), Expect = 4e-46 Identities = 275/377 (73%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 164685 GCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACC 164744 || ||| | ||| | || |||||| | || || ||| | ||||| || ||||| || Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 164745 CATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGAC 164803 ||||| | || ||| ||| | ||||| ||| ||||| | || ||||| ||||| || Sbjct 315 CATGGATTGGCAAGTTCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCAC 257 Query 164804 GCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 164862 |||||| || ||| | | || ||| | | |||| ||||||||||| | ||||| Sbjct 256 TCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAG 198 Query 164863 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 164922 |||| || ||||| ||| | || || || |||| ||| || |||||||||||||| | Sbjct 197 ATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTT 138 Query 164923 TCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGT 164981 ||| |||| ||||||||| | || || ||||| || || || ||| || | || Sbjct 137 TCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGG 79 Query 164982 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATC 165041 ||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||||| Sbjct 78 CCTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 19 Query 165042 TACCCACTGGGTCAGTC 165058 || |||||||||||||| Sbjct 18 TATCCACTGGGTCAGTC 2 >seq15031 Length=1318 Score = 197 bits (218), Expect = 2e-45 Identities = 284/397 (72%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 163033 CGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTT 163092 |||||||| || |||| || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 163093 CCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGAT 163152 || |||| || || ||| | || || ||||| || |||||||| ||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 163153 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT- 163211 || ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 163212 -CTATGCATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGA 163270 || ||| |||||||| ||||| ||||||||| | ||| | |||||||| || |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 163271 TCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTT 163330 | ||| ||||| || || ||||||||||| || | || || ||| || |||||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 163331 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACA 163390 | ||||| || || || || | ||||| || || || ||||| || ||||| | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 163391 TGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 163427 || |||| || || || ||||| || || || ||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562806137762920