Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq15031 266 3e-66 seq37735 179 4e-40 >seq15031 Length=1318 Score = 266 bits (294), Expect = 3e-66 Identities = 298/396 (75%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 8389 CGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTT 8448 || || || ||| |||||||||| | || || ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 8449 CCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGAT 8508 || | ||| || || || | || || || || || |||||||| || || ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 8509 GAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTC 8568 || ||| | ||||| || |||||||| | || | ||| | |||||| | ||||| || Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 8569 T-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGAT 8627 ||||| ||||||||||||| ||||||||| || || || || |||||||||||||| Sbjct 1103 GCTTGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT 1161 Query 8628 CTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTT 8687 ||||||||| || ||||||||||| || || ||||||| ||| | |||||||| | Sbjct 1162 TGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTAT 1221 Query 8688 TGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATAT 8747 |||||| || || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 1222 TGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTAT 1281 Query 8748 GCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCA 8783 | |||| || ||||||||||| || || || ||||| Sbjct 1282 GATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 179 bits (198), Expect = 4e-40 Identities = 260/362 (72%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 9908 GGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGT 9967 || || ||| | || || || || ||||| || ||||| ||||| ||| | |||||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 9968 AGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGAT-GCTA 10025 ||| | || || ||| || ||| | || || || ||||| || |||||| || ||| Sbjct 300 TCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 10026 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGA 10085 | | || ||| | | |||| ||||||||||| | ||||||||||| ||| ||| Sbjct 242 TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGT 183 Query 10086 TCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCT 10145 || | || || || ||| ||||||| || |||||||| || |||| ||||| || | Sbjct 182 GTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTT 123 Query 10146 TTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCG 10205 | |||||||| || ||||| || || ||| || | | || ||||| ||||| || | Sbjct 122 TCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATTG 63 Query 10206 CGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGT 10265 | || || || || |||||||||||||| ||| ||||| || |||||||| || |||| Sbjct 62 CATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGT 3 Query 10266 CT 10267 || Sbjct 2 CT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516110013096000