Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7699 122 6e-22 seq13021 109 4e-18 seq6376 105 4e-17 >seq7699 Length=4151 Score = 122 bits (134), Expect = 6e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 474640 TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACA 474699 |||||| ||| ||||| || || ||||||| | ||||| || || || ||||| | Sbjct 330 TGAAACGAAAACTTTTTCCCCTCAAGAAATTTCGGCTATGGTCTTGGCTAAGCTGAAAGA 389 Query 474700 AACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCAT 474758 |||||| || || | || || |||| || | | || || || || || ||||| | Sbjct 390 AACCGCTGAAGCCAAA-CTCGGGAAAGAGGTGAAAAAAGCGGTTATCACCGTACCAGCTT 448 Query 474759 ATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATG 474818 |||||||||| || ||||| | |||||||||| || || ||||| |||||| ||| Sbjct 449 ATTTTAATGACTCCCAACGATTATCAACTAAAGACGCCGGTGCTATTGCTGGTCTTGATG 508 Query 474819 TTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || | ||||| || || |||||||| || || || | ||||| ||||||| Sbjct 509 TTCTTCGTATCATCAACGAACCAACTGCCGCTGCCATCGCTTACGGTCTTG 559 >seq13021 Length=3042 Score = 109 bits (120), Expect = 4e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 475943 ATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGAT 476002 ||| || | |||||| |||| || ||||| || ||| || || || | |||| Sbjct 1501 ATTAACCGTAATACTACTATTCCCACTAAAAAGTCTTCAGTCTTCTCTACCGCTGCTGAC 1442 Query 476003 AATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAAT 476062 |||||| |||| ||| | | ||| |||||||| || |||| | |||||| Sbjct 1441 GGCCAAACAGCTGTTGATATCAAGGTATTTCAAGGTGAACGAGAATTGGTGAGGGATAAT 1382 Query 476063 AACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAA 476122 || ||||||| ||| | || | || || ||||||||||||| |||| |||||||| Sbjct 1381 AAGTTGCTTGGAAACTTTCAGCTAGTCGGGATCCCTCCTGCTCCCAAAGGAATTCCTCAA 1322 Query 476123 ATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||||||||| ||||| ||| | || |||||||| | |||| |||| Sbjct 1321 ATTGAAGTTACATTTGACATTAACGCTGATGGTATTGTGGATGTATCTGC 1272 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| || ||||| || || || |||||||| ||||||| || ||||| |||||||| | Sbjct 2373 CAGTGATCACTGTGCCCGCCTACTTTAATGACGCTCAACGACAGGCAACCAAAGATGCCG 2314 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | |||||| | |||| ||||| | ||||||||||| || || || || | | Sbjct 2313 GCGCAATTGCCAAATTGGATGTCTTACGAGTAATTAATGAACCTACTGCTGCTGCCTTGG 2254 Query 474858 CTTATGGTCTTGATA 474872 |||||||||| |||| Sbjct 2253 CTTATGGTCTCGATA 2239 >seq6376 Length=4460 Score = 105 bits (116), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || || |||||||| || || || || || || || ||||| || | Sbjct 1620 TTACTGTCCCTGCCTACTTTAATGACTCCCAGCGCCAGGCCACCAAGGATGCTGGTTTGA 1679 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | |||||||| ||| | || || ||||| |||||||| || ||||| ||||||||| Sbjct 1680 TTTCGGGTCTTAACGTTCTCCGAATAATTAACGAACCAACCGCCGCCGCCATTGCTTATG 1739 Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 |||| || ||||| | | ||| ||||| | ||||||||| ||||||| Sbjct 1740 GTCTCGACAAGAAAACCCAGGGAGAGCGCAATGTCCTGATCTTTGATCTTGGAGGT 1795 Score = 91.5 bits (100), Expect = 1e-12 Identities = 167/247 (68%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 475493 AGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAA 475552 ||| | ||||||||||| || || || |||| || |||||| |||||||| | | ||| Sbjct 2041 AGACCAGCTTGTGAACGAGCCAAACGCACTCTGTCGTCTGCTGCTCAAACTTCCATCGAA 2100 Query 475553 GTTGATTCTCTTTTTGAAGGA-----ATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 | || ||| | ||| || || | |||| || ||| | ||| || Sbjct 2101 ATCGACTCTTTGTTTNNNNNNNNNNTATCGACTTCTATACATCGATCACACGAGCTCGAT 2160 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 ||||||| | || |||||||| || ||||| || || || ||||| |||| | | Sbjct 2161 TTGAAGAGCTCTGCCAAGATCTCTTCAGGAAAACTATGGAGCCTGTTGAGAAAGTCTTGA 2220 Query 475668 GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAA 475727 | ||||| || |||| ||| | | || || ||||| |||||||| || ||||| || Sbjct 2221 GGGATTCCAAGATTGATAAAGCTAACGTTCACGAAATAGTTCTTGTCGGTGGTTCTACCC 2280 Query 475728 GAATTCC 475734 | ||||| Sbjct 2281 GTATTCC 2287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265720938926732