Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq15031 201 1e-46 seq37735 159 4e-34 >seq15031 Length=1318 Score = 201 bits (222), Expect = 1e-46 Identities = 285/397 (72%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 103622 TGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATA 103681 ||||| ||||| ||||| || || || || || | ||| | ||||| || || ||||| Sbjct 1317 TGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCAGAAATT 1258 Query 103682 CCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCG 103741 || | ||||||| |||| || || || ||||||| || |||| |||||| || || Sbjct 1257 CCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACAGCA 1198 Query 103742 GACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGG 103801 | ||| || ||||||||||| || ||||| ||| ||||| || ||||| |||||||| Sbjct 1197 GTCGCCGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGA 1138 Query 103802 TAGGACAATTCCCACTCACGTCCCATATATGCATAG--ATGCCAATGAGGAAGTGGAATA 103859 | | |||||||||||| |||||||| ||| || | |||| | |||||| | | Sbjct 1137 AAACTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGTAGAA 1080 Query 103860 CTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAA 103919 | | |||| ||||||| || || || | ||| ||||||| ||||| |||||||| | Sbjct 1079 CAATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATA 1020 Query 103920 TGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGT 103979 | ||||| || || | ||| || || || | |||| || |||||||| || || | Sbjct 1019 TAGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATAT 960 Query 103980 TGTTACCGTACATGAGTGAACCAGCGACGGGTTCACG 104016 |||| || || | || || |||| || || ||||| Sbjct 959 TGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 923 >seq37735 Length=758 Score = 159 bits (176), Expect = 4e-34 Identities = 262/375 (70%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 102271 GACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAAC 102330 ||||| || || ||||| || || || ||| ||||||||||| || || || ||||| Sbjct 2 GACTGACCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCTGAGAAT 61 Query 102331 GCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATG 102390 ||||| ||||| || || || | | || | | ||| | || |||||||| | |||| Sbjct 62 GCAATTGCATTATAAGGCCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATG 121 Query 102391 AAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGG 102450 ||||| || | | || |||||||||||||| ||||||| ||| || || || | ||| Sbjct 122 AAACCTATTAATCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACAGACCACCTAATTGA 181 Query 102451 ACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCC 102510 ||| | | |||||||| || |||||||||||||| |||| | | ||| || | Sbjct 182 CACCAACGGGTAAAATCTCCCTGTGCTTCAGGACCCCACAGTAACAACAAAGAGTGTGCT 241 Query 102511 ATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCA-CCTTCAAGGTAACT 102569 | | |||||| || || || || || || | ||| || ||| ||||| | ||| Sbjct 242 AAGCTATTAGCAGGAGTGGAGACTGCTGCGGTTAAGAAGTT-GCATCCTTCCAAATAAGA 300 Query 102570 AGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCC 102629 | || | || || |||||||| ||||| |||| || || || || | ||| ||||| Sbjct 301 ACTTGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCC 360 Query 102630 AATTGCGAGATAAGC 102644 | |||| ||| || Sbjct 361 CAAGGCGAAATAGGC 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633059774613720