Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq15031 192 7e-44 seq37735 140 4e-28 seq7182 114 1e-20 >seq15031 Length=1318 Score = 192 bits (212), Expect = 7e-44 Identities = 264/369 (72%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 124495 ATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGAT 124554 |||||| ||||| |||||||| || || || || | |||||| ||||||||||| || || Sbjct 1318 ATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCAGAAAT 1259 Query 124555 ACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGC 124614 || || ||||||||||| || || |||||||||| || || | ||||| ||||| Sbjct 1258 TCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACAGC 1199 Query 124615 GAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCT 124674 || || | || || |||||||| |||||| |||||||||||||| || | | Sbjct 1198 AGTCGCCGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACG 1139 Query 124675 GTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAAT 124734 | |||||||||| | ||||| || | | ||||| | |||||| | || Sbjct 1138 AAAACTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAAC 1079 Query 124735 TACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGAT 124794 | | | ||||||||| ||||| || |||||||||||||| | ||| |||||||| || Sbjct 1078 AATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATAT 1019 Query 124795 TGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTT 124854 || || || || | || ||||| || | |||| || |||||||| || || || Sbjct 1018 AGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATT 959 Query 124855 GTTACCATA 124863 ||| ||||| Sbjct 958 GTTTCCATA 950 >seq37735 Length=758 Score = 140 bits (154), Expect = 4e-28 Identities = 245/357 (69%), Gaps = 0/357 (0%) Strand=Plus/Plus Query 123454 CTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGC 123513 |||||| |||||||| || || || | | || || || || | | |||||||| Sbjct 4 CTGACCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCTGAGAATGC 63 Query 123514 GAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAA 123573 | ||| || ||||| | | ||| || || | |||||||| | | |||||| Sbjct 64 AATTGCATTATAAGGCCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATGAA 123 Query 123574 ACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAA 123633 |||||| | ||| || | || || | || ||||| |||| ||||| || | ||| | Sbjct 124 ACCTATTAATCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACA 183 Query 123634 CCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCAT 123693 |||||| || ||| ||||||||||| ||||| || |||| | | || | | Sbjct 184 CCAACGGGTAAAATCTCCCTGTGCTTCAGGACCCCACAGTAACAACAAAGAGTGTGCTAA 243 Query 123694 TGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGA 123753 | | |||| |||||||||||||| ||||||||||| ||| || | ||| ||| Sbjct 244 GCTATTAGCAGGAGTGGAGACTGCTGCGGTTAAGAAGTTGCATCCTTCCAAATAAGAACT 303 Query 123754 TGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACC 123810 ||| | ||||| ||||||||||| || || ||||| || ||| ||||||||| || Sbjct 304 TGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCC 360 >seq7182 Length=4296 Score = 114 bits (126), Expect = 1e-20 Identities = 192/277 (69%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 139752 ATGCCTAATGGTTTTGCTCTGGTTTCTAGAACTGCTAGAGTTTGTGGGAATATATCTTGA 139811 || |||| ||||| ||||| | || || |||| | ||||| ||||| | | || Sbjct 734 ATACCTATTGGTTCAGCTCTAGATTTTAAGACTGAAATGGTTTGAGGGAAAACTGATCGA 675 Query 139812 TCAACTATTACAGTCTTC---TTATCTCTTGTAGAATTATATGCTAACAGCATTGCCTCT 139868 || || | | ||| || ||| | || | ||||| ||| ||| ||| || || Sbjct 674 TCGACAAGGAAAGTTTTTCTTTTAGATTTTAAATAATTAAATGATAAACTCATAGCTTCA 615 Query 139869 GCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCT 139928 || || |||||||||||||| | |||||| ||||| || || ||||| | || || Sbjct 614 GCGGCGGCAGTTGCTTCATCCAGTAGAGAGGCGTTAGCGATAGGTAAACGAGTTAGAGAG 555 Query 139929 GTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGA 139988 |||| | ||||| | || | ||| | ||| | ||| || ||||| || |||| |||| Sbjct 554 CTGATCATAGTTTGAAAGTTAATTAAGGATTCTAGTCTGCCTTGAGAGATTTCAGGTTGA 495 Query 139989 TAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAA 140025 || ||||| ||| |||||||||||| | ||| |||| Sbjct 494 TAAGGAGTATAACTTGTGTACCAACTTGAATTTTCAA 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578583627258680