Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq15031 237 2e-57 seq37735 143 3e-29 >seq15031 Length=1318 Score = 237 bits (262), Expect = 2e-57 Identities = 290/396 (73%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 165910 CGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 165969 ||||| || || |||| ||||| | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 165970 CCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGAC 166029 || |||| || || ||| | || || ||||| || |||||||| ||||| |||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 166030 GAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATC 166089 |||||| | || || || ||||||| |||| |||| | |||||| | |||| | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 166090 TATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATC 166149 | ||| |||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 1162 Query 166150 TGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTC 166209 |||||| || ||||| || || || || |||| ||| || ||| | | |||||| | Sbjct 1163 GCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATT 1222 Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 ||||| || || || || |||| ||||| || ||||| || || || ||||| | ||| Sbjct 1223 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 1282 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 | || || || |||||||| |||||||| |||||| Sbjct 1283 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 >seq37735 Length=758 Score = 143 bits (158), Expect = 3e-29 Identities = 252/360 (70%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 167107 GGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGC--GT 167164 || |||||| | || || || || || || || ||||||||||||||| | || || Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 167165 CCAGTTATCTTGAGGG-TGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCT 167223 | |||| | || || ||| ||||| | || || ||||| ||||| || || Sbjct 300 TC--TTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGC 244 Query 167224 ATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGG 167283 | | || ||||| | | || |||||||||||| | || || ||||| | | ||| Sbjct 243 TTAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGG 184 Query 167284 CTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGT 167343 ||| | || || || ||| ||||||| || |||||||| || || | | || ||| Sbjct 183 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGT 124 Query 167344 TTCATGCTTCGACAGTTTGAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTAT 167402 |||||| | || || |||||||||||||| ||| || | || || || ||||| || Sbjct 123 TTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGGCCTTATAATGCAAT 65 Query 167403 TGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCA 167462 ||| ||||| ||||| |||||||| || ||| || |||||| | ||||| || ||||| Sbjct 64 TGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560845942979600