Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq6376 210 3e-49 seq7699 208 1e-48 seq1921 134 2e-26 seq31067 104 3e-17 seq17950 89.7 7e-13 >seq6376 Length=4460 Score = 210 bits (232), Expect = 3e-49 Identities = 212/276 (77%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 195712 AGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGC 195771 ||| || ||||| ||||| ||||| | ||| || || || ||||| || ||||| |||| Sbjct 1615 AGTCGTTACTGTCCCTGCCTACTTTAATGACTCCCAGCGCCAGGCCACCAAGGATGCTGG 1674 Query 195772 TGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGC 195831 | ||| ||||||| ||| ||| |||| || || |||||||| || || || ||||| Sbjct 1675 TTTGATTTCGGGTCTTAACGTTCTCCGAATAATTAACGAACCAACCGCCGCCGCCATTGC 1734 Query 195832 TTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 ||||||||| |||||||| | | | ||| ||||| ||||||||||||| || || Sbjct 1735 TTATGGTCTCGACAAGAAAACCCAGGGAGAGCGCAATGTCCTGATCTTTGATCTTGGAGG 1794 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 |||||| ||||||||||| ||||| | || || | || || |||||||| ||||| || Sbjct 1795 TGGTACCTTTGATGTCTCCCTTCTTACCATCGAGGAGGGCATCTTCGAAGTCAAGGCCAC 1854 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||| ||||| |||||| | ||||| ||||| ||||| Sbjct 1855 TGCCGGTGACACTCATTTGGGTGGAGAAGACTTCGA 1890 Score = 185 bits (204), Expect = 1e-41 Identities = 307/445 (69%), Gaps = 9/445 (2%) Strand=Plus/Plus Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| || ||||| ||||| |||||||| || ||||| || || ||| Sbjct 2396 AACAAGTCCATCAACCCTGACGAAGCCGTTGCCTATGGTGCTGCTGTTCAAGCCGCCATT 2455 Query 196424 CTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTA 196483 |||||||||| | | | || |||||| ||||| || || ||||| || || || Sbjct 2456 CTCTCAGGTGATACCTCGGAAAAAACCCAAGACCTTCTCCTCCTCGATGTCGCCCCTCTA 2515 Query 196484 TCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACT 196543 ||| ||||| ||||||||||||| ||||| | ||| |||| | | || || ||| Sbjct 2516 TCCATGGGTATTGAAACAGCGGGAGGTGTCTTTACTCCTCTTATCAAGCGCAATACCACT 2575 Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603 |||| ||||| |||| | | | || || || ||| |||| |||||||| ||||| Sbjct 2576 GTTCCTACTAAAAAGGGAGAGATTTTCTCCACCTATGCCGACAATCAACCTGGTGTATTG 2635 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTC 196663 |||||||| || || || || || ||||| | || || ||| | || || || | ||| Sbjct 2636 ATTCAAGTGTACGAGGGTGAGCGTGCCCGTACCAAAGACAACAACCTTCTCGGCAAGTTC 2695 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | | || || ||| | || || || || ||| | ||| ||| ||| Sbjct 2696 GAGCTTTCTGGTATCCCACCAGCCCC---------TCGTCAAATTGAGGTTACCTTTGAT 2746 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 | ||||| |||||||| |||| || | || | |||||| | |||| ||||| | Sbjct 2747 GTCGACGCCAATGGAATCTTAAATGTGTCTGCCGCTGACAAGACCACTGGTAAATCCAAC 2806 Query 196784 AAGATTGTGATTACCAATGACAAGG 196808 || || || || ||||| |||| Sbjct 2807 AAAATCACCATCACTAATGATAAGG 2831 Score = 178 bits (196), Expect = 2e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | ||||||||| | || || || ||||| ||||||||||||||||||||||| || Sbjct 1082 AGCTGTCGGTATCGATCTCGGCACCACATACTCCTGTGTTGGTGTATGGCAAAATGACCG 1141 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || || | || |||||||||||||| || ||||| || || |||||||| || Sbjct 1142 AGTTGAAATCATTGCCAACGACCAAGGAAACCGCACTACTCCTTCCTATGTTGCCTTCAC 1201 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 || |||| | | |||| ||||| || || || || ||||||||||| ||| Sbjct 1202 TGACTCTGAAAGGTTGATTGGTGATGCTGCCAAGAACCAAGTGGCTATGAACCCACACAA 1261 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAA 195513 |||||||||||||| |||||||| ||||||||||| Sbjct 1262 CACTGTCTTTGACGCCAAGCGTCTCATTGGTCGCAA 1297 Score = 118 bits (130), Expect = 1e-21 Identities = 182/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||| |||| || | || | || |||||||| |||||||| ||||| || ||| | ||| Sbjct 2026 GCTGTTCGGCGATTAAGACCAGCTTGTGAACGAGCCAAACGCACTCTGTCGTCTGCTGCT 2085 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGA-----ATTGACTTCTATACAACTA 196175 ||||| | || || || || |||||| || |||||||||||| | | Sbjct 2086 CAAACTTCCATCGAAATCGACTCTTTGTTTNNNNNNNNNNTATCGACTTCTATACATCGA 2145 Query 196176 TTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTG 196235 | || || || || ||||||||| | | ||| | || ||||| |||||| |||| Sbjct 2146 TCACACGAGCTCGATTTGAAGAGCTCTGCCAAGATCTCTTCAGGAAAACTATGGAGCCTG 2205 Query 196236 TTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTG 196295 |||| |||| | | || | ||||| ||||| |||| ||| | ||||| || |||| Sbjct 2206 TTGAGAAAGTCTTGAGGGATTCCAAGATTGATAAAGCTAACGTTCACGAAATAGTTCTTG 2265 Query 196296 TGGGAGGATCAACCCGTATTCC 196317 | || || || ||||||||||| Sbjct 2266 TCGGTGGTTCTACCCGTATTCC 2287 >seq7699 Length=4151 Score = 208 bits (230), Expect = 1e-48 Identities = 549/833 (66%), Gaps = 20/833 (2%) Strand=Plus/Plus Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 ||||||| || ||| | |||| ||| | || ||||||||||| ||||||| ||| Sbjct 316 GTTGAATATCTGAATGAAACGAAAACTTTTTCCCCTCAAGAAATTTCGGCTATGGTCTTG 375 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 |||| |||| || || || ||| | | || ||| |||||| | || ||| | Sbjct 376 GCTAAGCTGAAAGAAACCGCTGAAGCCAAACTCGGGAAAGAGGTGAAAAAAGCGGTTATC 435 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || ||||| ||||| || | ||| || |||||| | || || ||||| | ||||||| Sbjct 436 ACCGTACCAGCTTATTTTAATGACTCCCAACGATTATCAACTAAAGACGCCGGTGCTATT 495 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| | |||| | || ||||| |||||||| || ||||| || ||||| ||| Sbjct 496 GCTGGTCTTGATGTTCTTCGTATCATCAACGAACCAACTGCCGCTGCCATCGCTTACGGT 555 Query 195839 C-TGGACAAG--------AACAAGG--ACGAA-GATAAAAATGTATTGATCTTTGATCTC 195886 | ||| ||| || |||| | ||| || | || || | || ||||| | Sbjct 556 CTTGGTGAAGCGAGTGACAAAAAGGATAAGAAGGAAAGAACCGTCCTCATTTTTGACTTG 615 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 || ||||| || ||||||||||| || || |||| || || | ||| || ||| Sbjct 616 GGGGGTGGGACCTTTGATGTCTCCCTCCTTTCCATTGCCGGGGGAGTTTTCACCGTTAAG 675 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 || ||||| ||||| ||||| | ||||||||||| || ||| || ||| ||| Sbjct 676 GCAACTGCCGGTGACACTCACTTGGGTGGTGAAGACTTTGATAATGCGCTCCTCGAACAT 735 Query 196007 TTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTT 196066 || | || ||| || ||| | || | ||||| |||| || | | || || Sbjct 736 TTTAAGAAAGAATTCAAGCGCAAGGAAAATATCGATATCACTGGTGATGCCCGCGCGCTG 795 Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACA 196126 || || ||| | | || || || || || || ||||| || || || | ||||| Sbjct 796 CGACGTCTTCGTTCCGCTTGCGAGCGAGCTAAGCGAACCCTTTCGTCAGTCACACAAACT 855 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 | |||||| | || || || | || || | || |||| | || ||| | | Sbjct 856 ACCGTTGAGGTGGACTCCTTATCTGGTGGTAAAGATTTCT---CGGCT----CCCAT-CT 907 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246 || ||||| || | ||| || | | || | |||| || || || | || Sbjct 908 CGATTTGAGGAAATCAACGCTCAAATCTTCCGTTCCACCTTGGATCCCGTGGACAAGGTT 967 Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || || || ||||| || ||| | ||||| || || |||||||| || || ||||| Sbjct 968 CTCAAGGATGCCAAGATTGACAAGGCAAAGGTCGAAGACATTGTCCTCGTCGGTGGATCG 1027 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 || || ||||| || |||||| | | || ||| || | | ||||||| Sbjct 1028 ACTCGAATTCCCAAAATTCAATCTCTTGTATCCGACTTTTTTGGTGGACGTGCTTTAAAC 1087 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419 |||| |||||||| ||||| || |||||||||||||| |||||||| ||||| Sbjct 1088 AAAAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCCGCCGTTCAAGCTGC 1140 >seq1921 Length=7076 Score = 134 bits (148), Expect = 2e-26 Identities = 184/255 (72%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || | || || ||||| || ||||| || | || |||||| ||| | ||| Sbjct 3362 CTTCAACGACGCTCAGCGTCAGGCTACCAAGGATGCCGGTGTTATTGCCGGTTTGAACGT 3421 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852 ||| |||| ||||||| || | || || |||||||| || || || ||||| | || Sbjct 3422 CCTTCGAATCGTCAATGAGCCTCCCGCTGCAGCAATTGCATACGGACTTGACAAAACTAA 3481 Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || ||| | ||| | |||| ||| ||| | || |||||||| ||||||||||| || Sbjct 3482 GGGTGAACGTCAAATT--ATTG-TCTACGATTTGGGAGGTGGTACTTTTGATGTCTCTCT 3538 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 |||| |||||| | || | || ||||| ||||||||| ||||| ||||| | || Sbjct 3539 TCTCTCTATTGATGAGGGAGTCTTTGAAGTCTTGGCTACTGCCGGTGACACTCACTTGGG 3598 Query 195973 TGGTGAAGATTTCGA 195987 |||||||| || || Sbjct 3599 AGGTGAAGACTTTGA 3613 >seq31067 Length=1669 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || |||||||| ||||| | || |||||||| || |||||||||||||| | || Sbjct 1262 CTCACCGGAAAAACCATCACTTTGGAAGTTGAGTCTTCCGACACAATCGATAATGTGAAG 1321 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTAT 171992 |||||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 1322 GCCAAGATTCAAGACAAAGAGGGCATTCCTCCAGACCAACAACGTCTTAT 1371 >seq17950 Length=2450 Score = 89.7 bits (98), Expect = 7e-13 Identities = 211/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 182792 ATCAGTCATAATCATGAGACGACCATACCGAAGCTCGGAT-ACATCTTTG-TATTCTTTT 182849 ||||||||||||||| | || |||||||| || || || | || || |||| ||| Sbjct 1662 ATCAGTCATAATCATCAAACTTCCATACCGGAG--CGAATCTCGACTCTGATATTTTTTG 1605 Query 182850 CCTTGTTGGAGACCCAATATTTTCTTTAGGTCGTTGAACTCTTGATTTCCAGTCAACTGG 182909 |||||||| ||||||| || | |||| || | || ||| ||| | || ||| Sbjct 1604 CCTTGTTGTAGACCCATGATCTGTTTTATGTGTTGGATTTCTGCATTGGCTAATAATTGG 1545 Query 182910 GCCACAGATGCATCTCGGACATTCTTACACTTTCCCCGAAGTGGAAAGACGCCGTAATGA 182969 || || || || || |||||| | || || || | |||||| || || | | Sbjct 1544 GCGCCATTGGCCTCGCGTACATTCAGCAATTTACCTCGTAATGGAAAAACACCAAAGTTG 1485 Query 182970 TCCCTTCCAACAACAGAGAGGCCAGCGACAGCGAGTGTCTTTGCCGAGTCACCCTCTGTC 183029 |||| |||| |||||| || |||||||| || | | || || ||||| || || || Sbjct 1484 TCCCGCCCAATAACAGAAAGACCAGCGACGGCCAAGGATTTAGCTGAGTCTCCTTCGGTT 1425 Query 183030 ACGATGAGTGTACACTTAGAAGATTGGGCTGTCCCAGCTTTGTTTGCGTCATCAAGCTTG 183089 | || | ||| || | | | || || ||||| || ||||| || || |||||| Sbjct 1424 AAAATCAATGTGCAATCGGCCGCTTTTTTGGTTCCAGCATTATTTGCATCTTCTAGCTTG 1365 Query 183090 GGAATACCAGTAATT 183104 |||| || || ||| Sbjct 1364 AGAATGCCTGTGATT 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657391132046480