Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq15031 183 9e-42 >seq15031 Length=1318 Score = 183 bits (202), Expect = 9e-42 Identities = 283/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 40980 TGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATT 41039 ||||| ||||| || || || || || || |||| ||| || ||||| || ||| ||| Sbjct 1317 TGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCAGAAATT 1258 Query 41040 CCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCT 41099 |||| |||||||||||| || || |||||||| | ||||| | ||||| ||||| Sbjct 1257 CCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACAGCA 1198 Query 41100 AGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTG 41159 || |||| | ||||||| ||||| ||| ||||| || | |||||| || | Sbjct 1197 GTCGCCGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGA 1138 Query 41160 TATGAAAGTTCCCACTGTCTACCAGCGTAT-GCT-GCTACTCCTATTAAAAAGTGAAAGA 41217 | ||||||||||| | ||| | ||| || ||||| || | ||| ||||| | | Sbjct 1137 AAACTAAGTTCCCACTCACGACC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAA 1080 Query 41218 CAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAG 41276 |||| |||| ||| || ||||| ||||||| ||| || || | | ||||| ||||||| Sbjct 1079 CAATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCG-CTTCCCAT 1021 Query 41277 ATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATA 41336 || || || ||||| | || || || ||| | |||| | || ||||| |||||| Sbjct 1020 ATAGGATAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATA 961 Query 41337 TTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 ||||| || || | || || || ||||| |||||||| Sbjct 960 TTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143604604140006