Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq15031 161 1e-34 seq37735 134 2e-26 >seq15031 Length=1318 Score = 161 bits (178), Expect = 1e-34 Identities = 271/392 (69%), Gaps = 0/392 (0%) Strand=Plus/Plus Query 72379 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCA 72438 || || ||| | || ||| | | ||||| ||||| || || |||||||| | |||| Sbjct 926 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCT 985 Query 72439 TCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAG 72498 |||| || ||||| || || || ||||| || |||||||| || | | || || Sbjct 986 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGATGAA 1045 Query 72499 TGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCT 72558 ||||| || || || |||||||| | || || || | |||||| | |||| | || Sbjct 1046 TGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1105 Query 72559 GCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGT 72618 ||| |||||| | |||||||||| | | || || ||| | |||||||| | Sbjct 1106 TGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 1165 Query 72619 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 72678 || ||||| ||||| ||||| | || || ||| || ||| | | ||||| | ||| Sbjct 1166 GTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATTGGT 1225 Query 72679 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 72738 ||||| || || ||||||||||| ||||| || || ||||| ||||| || ||| | Sbjct 1226 CAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATT 1285 Query 72739 GTGTTCCAAGCAGAACACAACATACTAATGCA 72770 || || || || || || || || || ||||| Sbjct 1286 GTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 134 bits (148), Expect = 2e-26 Identities = 216/308 (70%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 73457 GGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCC 73516 || ||||||||| ||| || || || || || |||||||| || ||||| | ||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 73517 TCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGAT-GCTAT 73575 || ||| | || ||| || || ||||| |||||||| || || |||| | || ||| | Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT-T 242 Query 73576 GGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTT 73635 | || | | ||||| || ||||| || || ||||| |||||| || || |||| Sbjct 241 AGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTG 182 Query 73636 TCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTT 73695 |||||||||||| || |||| ||||| || | || || | || ||| | |||||||| Sbjct 181 TCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTT 122 Query 73696 CATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGC 73755 |||| | | || ||||| |||| || |||| | || ||||| || ||| | || Sbjct 121 CATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATTGC 62 Query 73756 TTTTTCAG 73763 || |||| Sbjct 61 ATTCTCAG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572463214835720