Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq15031 223 4e-53 seq37735 185 1e-41 >seq15031 Length=1318 Score = 223 bits (246), Expect = 4e-53 Identities = 292/398 (73%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 177699 CGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTA 177758 ||||| || || |||| || || | ||||| ||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 177759 CCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGAT 177818 || |||| || || ||| | || || ||||| || |||||||| ||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 177819 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT- 177877 || ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 177878 -CTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGA 177936 || ||| |||||||| ||||||||||||||| | ||||| |||||||| || |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 177937 TCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCT 177995 | ||||||||| || || ||||||||||| || | || || ||||| | |||||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGT-TTTCTTGATCTATCCT 1219 Query 177996 TTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTAC 178055 | ||||| || || || |||| ||||||||| || || ||||||||||| || | Sbjct 1220 ATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTT 1279 Query 178056 ATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCA 178093 ||| ||||||| || || || || ||||| |||||||| Sbjct 1280 ATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 185 bits (204), Expect = 1e-41 Identities = 272/377 (72%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 179017 GCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACC 179076 || ||| | ||| | || |||||| | || || ||| | ||||| || ||||| || Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 179077 CATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGAC 179135 ||||| | || ||||| ||| | ||||| ||| ||||| | || ||||| ||||| || Sbjct 315 CATGGATTGGCAAGTTCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCAC 257 Query 179136 GCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 179194 |||||| || ||| | | || ||| | | |||| ||||||||||| | ||||| Sbjct 256 TCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAG 198 Query 179195 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 179254 |||| || ||||| ||| | || || || |||| ||| || |||||||||||||| | Sbjct 197 ATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTT 138 Query 179255 TCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGT 179313 ||| |||| || |||||| | ||||| |||||||| || || ||| || | | || Sbjct 137 TCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGG 79 Query 179314 CCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATC 179373 ||||| ||||| ||||| || | ||||| ||||| || || ||| |||||| || || Sbjct 78 CCTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 19 Query 179374 TACCCACTTGGACAATC 179390 || ||||| || || || Sbjct 18 TATCCACTGGGTCAGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605233322730440