Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq15031 221 1e-52 seq37735 176 5e-39 >seq15031 Length=1318 Score = 221 bits (244), Expect = 1e-52 Identities = 290/398 (73%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 160101 CGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 160160 ||||| || || |||| || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 160161 CCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGAT 160220 || |||| || || ||| | || || ||||| || |||||||| ||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 160221 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT- 160279 || ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 160280 -CTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 160338 || ||| |||||||| ||||||||||||||| | ||| | |||||||| || |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 160339 TCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTT 160398 | ||| |||||||| ||||| || || || || ||||||| ||| | | |||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 160399 TCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 160458 | ||||| || || || |||| ||||||||| || || ||||||||||| || | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 160459 TGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160496 || ||||||| || || || || ||||| ||||||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 >seq37735 Length=758 Score = 176 bits (194), Expect = 5e-39 Identities = 261/362 (72%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 161781 GGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGT 161840 || |||||| | || || ||||| || | ||| |||||||| ||||| | || ||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 161841 TCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGAC-GCTA 161898 || ||| | || || ||||| ||| | || || |||| |||||| ||| | ||| Sbjct 300 TCTTATTTGGAAGGATGCAA-CTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 161899 TGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGG 161957 | | || ||| || || || || ||||||||||| || || || ||||| ||| ||| Sbjct 242 TAGCACACTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGG 184 Query 161958 GTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGA 162017 ||| | || || || |||| |||||| || ||||| ||||| |||| |||| || Sbjct 183 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGT 124 Query 162018 TTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATT 162077 |||||| | ||||| |||||||| || || | || | || || || ||||| ||| Sbjct 123 TTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATT 64 Query 162078 GCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAG 162137 || ||||| ||||| |||||||||||||| || |||||||| || ||| |||||||| Sbjct 63 GCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Query 162138 TC 162139 || Sbjct 3 TC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559103192315800