Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq15031 206 3e-48 seq37735 181 1e-40 >seq15031 Length=1318 Score = 206 bits (228), Expect = 3e-48 Identities = 286/397 (72%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 177990 CGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTT 178049 ||||| || || |||| || || | ||||| ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 178050 CCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGAT 178109 || |||| || || ||| | || || ||||| || |||||||| ||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 178110 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT- 178168 || ||| | || || || ||||||| |||| | || | |||||| | ||||| | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 178169 -CTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 178227 || ||| || ||||| ||||||||||||||| | ||| | |||||||| || |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 178228 TCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTT 178287 | ||| ||||| || ||||| || ||||| || | || || ||| || |||||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 178288 TCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACA 178347 | ||||| || ||||| || | ||||| || || || |||||||| ||||| | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 178348 TGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCA 178384 || |||| || || || || || || ||||| ||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 181 bits (200), Expect = 1e-40 Identities = 271/377 (72%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 179301 GCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACC 179360 || ||| | ||| | || |||||| | || || ||| | ||||| || ||||| || Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 179361 CACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCTGTCTCGAC 179419 || || | || ||||| ||| | || || ||| ||||| | || ||||| ||||| || Sbjct 315 CATGGATTGGCAAGTTCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCAC 257 Query 179420 GCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 179478 |||||| || ||| | | || ||| | | |||| ||||||||||| | ||||| Sbjct 256 TCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAG 198 Query 179479 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCT 179538 |||| || ||||| ||| | || || || |||| ||| || |||||||||||||| | Sbjct 197 ATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTT 138 Query 179539 TCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGA 179597 ||| | || ||||||||| | | ||||||||||||||||| ||| || | | Sbjct 137 TCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGG 79 Query 179598 CCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATC 179657 ||||| ||||| ||||| || || ||||| |||||||| || || ||| ||||| || Sbjct 78 CCTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 19 Query 179658 TATCCTTTGGGACAGTC 179674 ||||| |||| ||||| Sbjct 18 TATCCACTGGGTCAGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605575477447920