Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq15031 201 1e-46 seq37735 179 4e-40 >seq15031 Length=1318 Score = 201 bits (222), Expect = 1e-46 Identities = 285/397 (72%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 158520 CGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTA 158579 ||||| || || |||| || || | ||||| ||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 158580 CCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGAT 158639 || |||| || || ||| | || || ||||| || |||||||| ||||| ||||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 158640 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT- 158698 || ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 158699 -CTATGCATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGA 158757 || ||| |||||||| ||||| ||||||||| | || | |||||||| || |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 158758 TCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTT 158817 | ||| |||||||| || || || || || || ||||||| ||| | |||||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 158818 TCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 158877 | ||||| || || || |||| ||||||||| || || ||||||||||| || | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 158878 TGCTTGTATTCCAAGCAGAACACAACATCCTTATGCA 158914 || ||||||| || || || || || || |||||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 179 bits (198), Expect = 4e-40 Identities = 264/363 (73%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 159992 GGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGT 160051 || |||||| | || || ||||| || | ||| |||||||| |||||| | || ||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 160052 TCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGAC-GCTA 160109 || ||| | || || ||||| ||| | || || |||| |||||| ||| | ||| Sbjct 300 TCTTATTTGGAAGGATGCAA-CTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 160110 TGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 160168 | | || ||| || || || || ||||||||||| || || || ||||| | | ||| Sbjct 242 TAGCACACTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGG 184 Query 160169 ATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGA 160228 ||| | || || || |||| |||||| || ||||| ||||| |||| |||| || Sbjct 183 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGT 124 Query 160229 TTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTAT 160287 |||||| | ||||| |||||||| || || ||| || | | || ||||| ||||| || Sbjct 123 TTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAAT 65 Query 160288 TGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCA 160347 ||| ||||| ||||| |||||||| ||||| |||||||| || || ||| ||||||| Sbjct 64 TGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCA 5 Query 160348 GTC 160350 ||| Sbjct 4 GTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552077828630720