Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5913 158 1e-33 >seq5913 Length=4341 Score = 158 bits (174), Expect = 1e-33 Identities = 268/389 (69%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || ||||| ||||| || | ||||||| ||| ||| |||| ||| ||||| Sbjct 1361 CCTAAGATCGTTAATGGGCCTGAGATTCTCAATAAATTTGTTGGTGAATCTGAAAAAAAT 1420 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || | |||||||| || || ||| | ||| |||| || | Sbjct 1421 ATTCGGGAACTTTTTGCTGAAGCCGAGCTTGAATACAAAGCAAAAGGGGATGAATCGGGT 1480 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT------ 19602 || || ||||| || | |||||||| || ||||| |||||||| ||||||||| Sbjct 1481 TTACATATTATTATTTTTGATGAATTAGATGCAATTTGTAAGCAGAGAGGTTCTACAGGA 1540 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| | || || ||| | ||||| |||||| | || || || | || |||||| Sbjct 1541 GGTGGTACGGGTGTGGGTGATTCCGTTGTGAATCAATTACTATCTAAGATGGATGGTGTT 1600 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||||||||| || ||||||| ||||||||| || |||| | || || Sbjct 1601 GATCAGCTGAATAATATCTTGATTATTGGAATGACTAATCGATTGGACATGATTGATGAG 1660 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | || |||||||| || ||| | | || |||||| |||||| || ||| Sbjct 1661 GCTTTGCTTCGGCCCGGTCGATTAGAAGTCCACATGGAAATTTCCTTACCTGACGAAAAG 1720 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 || ||| || ||||| |||| |||||||| Sbjct 1721 GGTCGTTTGCAAATTCTAAATATACATAC 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397178395490545