Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq14259 257 2e-63 seq15031 192 7e-44 seq23319 185 1e-41 seq37735 165 1e-35 >seq14259 Length=2012 Score = 257 bits (284), Expect = 2e-63 Identities = 426/614 (69%), Gaps = 31/614 (5%) Strand=Plus/Minus Query 183630 GTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATTG 183689 |||| ||| |||| ||||| | ||| ||||| |||| || ||| || | || | || | Sbjct 949 GTCTATGGCTGACCGATATTGTACACCATCATTTAGCTATTGCAATTCTTTTCTTGATAG 890 Query 183690 CAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATTAGATG 183749 | ||||| |||||| | || ||||||||||||||||| || ||||| || ||||| | Sbjct 889 CGGGTCACATGTATAGGACCAACTGGGGTATTGGTCACAGTATAAAAGATATTTTAGAGG 830 Query 183750 GTCAGAATGG----TTTCC--CACAGGGTGTCACACACAGAGGATTATATGAATTTCTAG 183803 || || || ||| | |||||| || | ||| ||||||| | ||| Sbjct 829 CACATAAGGGTCCATTTACGGGCCAGGGT------CATAAAGGTCTATATGAGATCCTAA 776 Query 183804 CAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAGGATCT---ATCAGT- 183859 || ||| | ||||| ||| |||| | || || || ||| |||| ||| | || | Sbjct 775 CAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTGACCATTG 716 Query 183860 ---------ATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTGGT 183910 | |||| | || ||||||||| | ||||| ||||||||||| || | | Sbjct 715 TTGTAGCTCACCATATGAGCTCACCATATGTATTCTATGCCTCCTTATCCATACCTAGCT 656 Query 183911 ATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTCTT 183970 | ||| ||| ||| | | ||| || || ||||| |||||||| ||||| ||||| Sbjct 655 ACTGACTATGGTACACAACTTTCATTGTTTACACATCACATGTGGATTGGTGGATTTCTC 596 Query 183971 ATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTGTT 184027 || || ||||| | || ||||| | ||| |||| ||||||||||| ||| || || Sbjct 595 ATAGTTGGTGCTGCTGCGCATGCAGCTATTTTTATGGTAAGAGACTATGATCCGACTATT 536 Query 184028 CAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCAC 184087 | | | | | || |||||||| | | |||| | | | ||||||||||| || Sbjct 535 CGATACAACG---ATCTATTAGATCGTGTCCTTAGACATCGCGATGCAATCATATCACAT 479 Query 184088 TTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGAT 184147 | ||||||||||| || |||||||| ||||| ||||||||| | |||||||| |||||| Sbjct 478 CTTAACTGGGTATGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGAT 419 Query 184148 ATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAA 184207 | ||||| || || || | ||| | ||| | || |||| | || |||||||||||| Sbjct 418 ACCATGAGCGCTTTAGGGCGCCCTCAAGATATGTTTTCTGATCCCGCTATACAATTACAA 359 Query 184208 CCTGTATTTGCACA 184221 || || ||||| || Sbjct 358 CCCGTCTTTGCTCA 345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 184323 TAGGTACAGCAGACTTTATGATACATCACATACACGC-TTTCCAGATTCATGTTTGTGTA 184381 |||| ||||| || ||| || | ||||| || || || ||| || |||||||| ||| Sbjct 193 TAGGAACAGCCGATTTTTTGGTCCATCATATTCATGCATTTACA-ATTCATGTAACAGTA 135 Query 184382 TTAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGT 184441 || || ||||| ||||||||| ||| || | | ||||| ||| ||||| ||||| || Sbjct 134 TTGATACTTCTAAAGGGTGTTCTATTTGCTCGTAGCTCACGATTGATACCGGATAA-AGC 76 Query 184442 AAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTG 184475 || | |||| || | |||||||||||||| |||| Sbjct 75 AAATCTAGGTTTTCGTTTCCCTTGTGATGGACCTG 41 >seq15031 Length=1318 Score = 192 bits (212), Expect = 7e-44 Identities = 280/393 (71%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 189809 GAGCCAGTTGCAGGTTCACTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCT 189868 ||||| ||| | || || || || ||||| ||||| || ||||||||||| || | ||| Sbjct 926 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCT 985 Query 189869 TCATCAAATGCTATTGGTCTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAG 189928 | || ||||| ||| | || || || || || |||||||| ||| | || ||||| Sbjct 986 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGATGAA 1045 Query 189929 TGGCTTTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCA 189988 ||| | |||||||| |||||||| | | | | | |||||| | ||||| | | Sbjct 1046 TGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1105 Query 189989 GCATACATGGGAAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTG 190047 || ||||| | |||||||| ||| | | | || |||||| | |||||||| Sbjct 1106 TGCTATATGGGTCGTGAGTGGGAACTTAGTTTTC-GTCTGGGTATGCGTCCTTGGATTGC 1164 Query 190048 TGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGG 190107 |||||| |||||||| || || | || || ||| || ||| | | || || |||| Sbjct 1165 TGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATTGG 1224 Query 190108 TCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTT 190167 |||||| || || |||||||||||| |||| || || ||||| ||||| || ||| | Sbjct 1225 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT 1284 Query 190168 TGTATTCCAAGCAGAACATAATATCCTTATGCA 190200 |||||| || || || |||||||| |||||||| Sbjct 1285 TGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq23319 Length=1930 Score = 185 bits (204), Expect = 1e-41 Identities = 190/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || || || |||||||| || || ||||| || |||||||| || Sbjct 1896 AATGTCACATTCAGTAAAGATTTATGATACATGTATAGGATGTACTCAATGTGTCCGAGC 1837 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 || || ||||||||||||||| | |||||||| || || ||||| || |||||||| Sbjct 1836 CTGCCCCACAGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCTAAACAAATTGC 1777 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| ||||||||||| || |||||||| |||||| | || ||||| || Sbjct 1776 TTCTGCCCCAAGAACAGAGGATTGTGTTGGTTGTAAGAGGTGTGAATCCGCTTGTCCGAC 1717 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723 || || |||||| || | ||||| || | ||| ||||| || ||||||||||||||| Sbjct 1716 GGATTTCTTAAGTGTTAGAGTTTATTTATG-GCATGAAACAACGCGAAGCATGGGTCTAG 1658 Query 182724 CATATT 182729 | |||| Sbjct 1657 CTTATT 1652 >seq37735 Length=758 Score = 165 bits (182), Expect = 1e-35 Identities = 253/358 (71%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 190889 GGTGGTTGGTTCACAGGAACTACATTTGTTACTAGTTGGTATACACATGGAATTGCATCT 190948 || |||||||||||||| || || ||||| ||| |||||||| |||||| | ||| | Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 190949 TCATACCTTGAAGGAGCAAACTTTTTGACAGCAGCAGTATCCACACCTGGTGAT-GCTAT 191007 || || | |||||| ||||| || || |||||||| ||||| |||| | || ||| | Sbjct 300 TCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT-T 242 Query 191008 GGGTCATAGTTTATTATTCTTATGGGGTCCAGAGGCACAAGGTTCATTTGTTCGTTGGTT 191067 | || ||| || || | |||||||| || ||||| || ||| ||||||| Sbjct 241 AGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTG 182 Query 191068 ACAAATTGGTGGACTTTGGAACTTTGTAGCACTTCATGGTGTATTTGGTCTCATAGGATT 191127 ||| | ||||| || |||| ||||| || || || |||| || || | ||||| || Sbjct 181 TCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTT 122 Query 191128 CATGTTACGTCAGTTTGAAATTGCAGGATTGGTGGGTATTAGACCTTACAATGCTCTTGC 191187 |||||||||||| |||||| |||| ||| || | | ||||| ||||| |||| Sbjct 121 CATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATTGC 62 Query 191188 TTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCACTTGGTCAG 191245 || || | | || || ||||| ||||||| | || |||||||| |||||| Sbjct 61 ATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630974869232440