Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq15031 226 4e-54 seq37735 163 4e-35 >seq15031 Length=1318 Score = 226 bits (250), Expect = 4e-54 Identities = 287/395 (73%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 183337 CGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTT 183396 || || || ||| |||| || || | ||||||||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 183397 CCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGAT 183456 ||| |||| || || || | || || ||||| || |||||||| ||||| | ||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 183457 GAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTC 183516 || ||| | || || || |||||||| |||| | || | |||||| | |||| || Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 183517 TTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATC 183576 ||||| |||||||||||||||||| | || ||||| ||||||||||||||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 1162 Query 183577 TGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTC 183636 |||||| ||| || |||||||| || || || ||||| ||| || |||||||| | Sbjct 1163 GCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATT 1222 Query 183637 GGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG 183696 ||||| || ||| ||||||||||| || || || ||| || || || | |||| Sbjct 1223 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 1282 Query 183697 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 183731 |||| || || || ||||| || || || ||||| Sbjct 1283 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 163 bits (180), Expect = 4e-35 Identities = 258/362 (71%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 186054 GGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCT 186113 || || ||| | || || ||||| ||||| || |||||||| || || ||||| | Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 186114 TCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGAC-GCTA 186171 ||||| | || || ||| | || | | || |||||||| || ||||||||| | ||| Sbjct 300 TCTTATTTGGAAGGATGCAACTTCT-TAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 186172 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGT 186231 | | || ||| | | |||| ||||||||||| | || |||||| | | ||| |||| Sbjct 242 TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGT 183 Query 186232 TCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTT 186291 ||| | || || || |||| |||||| || |||||||| || || | | ||||||| Sbjct 182 GTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTT 123 Query 186292 TCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATT 186350 ||||| | || || |||||| | ||| ||| || | || || || ||||| ||| Sbjct 122 TCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGGCCTTATAATGCAATT 64 Query 186351 GCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAG 186410 || || || ||||| || ||||| |||||| ||||||||| || || || || || ||| Sbjct 63 GCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Query 186411 TC 186412 || Sbjct 3 TC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621624772093080