Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq15031 215 6e-51 seq37735 212 7e-50 >seq15031 Length=1318 Score = 215 bits (238), Expect = 6e-51 Identities = 288/397 (73%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 177739 CGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTT 177798 ||||| || || |||| || || | ||||| ||||| || ||||||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 177799 CCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGAT 177858 ||| ||||| ||||| ||| | || || ||||| || |||||||| || || | ||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 177859 GAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG--GTA 177916 || ||| | |||||||| ||||||| |||| || | | |||||| | | | ||| Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 177917 TCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGA 177976 || ||| || ||||||||||||||||||||| || || || ||||||||||| |||| Sbjct 1103 GCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 177977 TCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTT 178036 | ||| ||||| || ||||| || || || || ||||||| ||| | | |||||| Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 178037 TCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACA 178096 | ||||| || || || || | |||||| || || || ||| || ||||| | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 178097 TGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 178133 || |||| || || || ||||| || || || ||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 212 bits (234), Expect = 7e-50 Identities = 268/363 (74%), Gaps = 4/363 (1%) Strand=Plus/Minus Query 178930 TGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTT 178989 |||| |||||| |||| || ||||| || || || || ||||||||||| || | || Sbjct 362 TGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAA 303 Query 178990 CTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGAC-GCT 179048 ||| ||| | || ||||| || ||| | || || || || || ||||||||| | ||| Sbjct 302 GTTCTTATTTGGAAGGATGCAACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT 243 Query 179049 CTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGG 179108 | | ||| || | | | || |||||||| ||||| ||||||||||| ||| ||| Sbjct 242 -TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGG 184 Query 179109 CTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGT 179168 ||| | || || || ||| ||||||| || ||||||||||| |||| | |||||| Sbjct 183 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGT 124 Query 179169 TTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAAT 179227 |||||| | || || |||||| | || || ||| || | | || ||||| |||||||| Sbjct 123 TTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAAT 65 Query 179228 CGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACA 179287 || || || |||||||||||||| ||||| ||||| || || || ||||| || || || Sbjct 64 TGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCA 5 Query 179288 GTC 179290 ||| Sbjct 4 GTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595880027883440