Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq15031 206 3e-48 seq37735 145 9e-30 >seq15031 Length=1318 Score = 206 bits (228), Expect = 3e-48 Identities = 286/397 (72%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 169493 CGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTG 169552 || || || ||| |||| ||||| | ||||| ||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 169553 CCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGAT 169612 || |||| || || ||| | || || ||||| || |||||||| ||| | ||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 169613 GAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCAT- 169671 |||||||| ||||| || ||||||| |||| |||| | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 169672 -CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGA 169730 || |||| | |||||||||||||||||| | | ||||||||||||||| ||||||| Sbjct 1103 GCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGA 1160 Query 169731 TCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGT 169790 | |||||| || || ||||| ||||| || || | ||||||||| || |||| || Sbjct 1161 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTA 1220 Query 169791 TTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACA 169850 |||| || || || || || | ||||||||| || || || || || || || | | Sbjct 1221 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTA 1280 Query 169851 TGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCA 169887 || | || || || |||||||| || || || ||||| Sbjct 1281 TGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 145 bits (160), Expect = 9e-30 Identities = 254/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 170688 GGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGT 170747 || || ||| | || || || || ||||| || ||||| || || ||| | |||||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 170748 TCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT-GCTA 170805 || || | ||||| ||| || ||| | || || || || || || |||||| || ||| Sbjct 300 TCTTATTTGGAAGGATGC-AACTTCTTAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 170806 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGT 170865 | | || ||| | | |||| ||||||||||| | ||||| ||||| || |||| Sbjct 242 TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGT 183 Query 170866 TACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTT 170925 ||| | || || || |||| |||||| || |||||||| || || | | ||||||| Sbjct 182 GTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTT 123 Query 170926 TCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGACCGTACAATGCAATC 170984 ||||| | || || |||||| | ||| ||| || | | || || |||||||| Sbjct 122 TCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGGCCTTATAATGCAATT 64 Query 170985 GCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAG 171044 || ||||| ||||| || ||||| ||||| || ||||| || ||||| || || ||| Sbjct 63 GCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAG 4 Query 171045 TC 171046 || Sbjct 3 TC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591774171273680