Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6918 89.7 6e-13 seq8339 82.4 9e-11 >seq6918 Length=27162 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 ||| || || ||||||||||| || || ||||| || || | || ||| | || || | Sbjct 5034 AAAGGCATCAGCTAATCCTTGTACTCCGATACCAATCGGGCGGTGCCTCATGTTTGACTT 5093 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 | ||| || || | ||||| || || ||||| || ||| |||| || || | | | Sbjct 5094 CTTAGCCTCCGGTACCGGATAGTAGTTGATATCGATTATTCTATTCAGATTCCAGGTGAC 5153 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAA-ACATGT 53699 | ||| || || | ||||| |||| || ||| ||||| |||| | | || Sbjct 5154 CTCCTTGGTGACTTCATGTAGTTTTTGAAAGTCGTATTTGCCATC---AACAATATAAGT 5210 Query 53700 T--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 | ||| ||||| ||||| |||||||| ||||| || || | | | | ||||| || Sbjct 5211 TGGCAAGGCAATTGATGCTAGATTACAGACGGCAACTTCGTCGGGGGCAGAATATTCGAT 5270 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 ||||| |||||||| || | ||||||||||| Sbjct 5271 AATCTCGGTGCAAAGGTTGGAGGATTTGATGGTTCC 5306 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 54757 CTTC-ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT--TGATACGGCTAT 54813 |||| || |||| |||||| |||||||| ||||||||||| ||||| ||||| || || Sbjct 6595 CTTCGATGACTTGACTAAAGAGTTTTTTAGTTTCTTTGTGAAGATTACTGATA--GCGAT 6652 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 54872 || || |||| | ||| ||||| ||||| | || || || || || || |||| | Sbjct 6653 CCTGGCAGCTAAGACGGCGTAATCGGGATGACGAGTGGT-CATGTACGCGGCAGTTTCCG 6711 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 ||| || | |||| | ||| ||||| || || || || | | ||| | ||| || ||| Sbjct 6712 CTGCCAAATTGTCAAGTTCAACCGTGGTGACACCGTTGAAAACTCCATTGATGACTTTC 6770 >seq8339 Length=4102 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| || ||| ||||||||| ||||||| | || | || ||||| || || | | Sbjct 1667 CATGCAAAGTCGGTGTGTAGACCTTCGTCTCGAGATATCAGCTCATTGGAGAAGGTCAAT 1726 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 24247 || |||||||| || ||||| || ||||| || || || ||||||||||| || Sbjct 1727 CCAGGCATTAGTCCGCGCTTCTTGAGCCAGAAGATTGAAGCAAATGATCCTGA 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593604970813200