Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10166 93.3 4e-14 seq7108 82.4 7e-11 >seq10166 Length=49910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||| || ||| || | |||||||| ||||||||||| ||| Sbjct 22102 GACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAACAACTCGAA 22161 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| |||| ||||||| ||||| || ||||| || || |||||||| |||| | Sbjct 22162 GATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCATTTGGTCCTC 22221 Query 29175 CGATTACGAGGAGG 29188 ||| ||||||| || Sbjct 22222 CGACTACGAGGGGG 22235 >seq7108 Length=7890 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || |||||| | || ||||||||| | | |||||||| || ||| Sbjct 4954 AAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGAAAA 5013 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| | || |||| || ||||||||||||||||| || || | || Sbjct 5014 CAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTGCAT 5073 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||||| ||| | || || || Sbjct 5074 CTGGTGTTGCGACTTCGTGGTGG 5096 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| || | || |||||||| | || || ||||| || || ||||| ||| Sbjct 5830 GATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGAAAGCAACTCGAA 5889 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| ||||||||||||| |||||||| ||||| || || ||| |||| || Sbjct 5890 GATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTCCACTTGGTCTTG 5949 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 5950 CGTCTCCGCGGAGGG 5964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428253962278325