Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8339 118 1e-21 seq10166 113 5e-20 seq7108 113 5e-20 >seq8339 Length=4102 Score = 118 bits (130), Expect = 1e-21 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 |||||| |||||||| || |||||||||| ||| ||| | || || ||||| |||| | Sbjct 2357 TACAAACGCGCCGAGGCATCCTTCTGGACCGCCGAAGAGATTGATCTCTCCAAAGACATG 2298 Query 116708 AGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 ||||||||| | |||||| ||||| || |||||||| ||||| || ||| Sbjct 2297 CACGACTGGGACAACAAATTGAACTCTGACGAGAAACACTTCATCAAACACGTCCTCGCC 2238 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || ||||| || ||||||||||||||||| || | ||| | ||| || Sbjct 2237 TTCTTTGCCGCATCGGATGGCATCGTCAACGAGAACCTTATTGAGAGGTTCAGCGGCGAA 2178 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 || || |||||||| || || || ||||| || || || || Sbjct 2177 GTCCAAGTGGCCGAAGCACGCTGTTTCTATGGATTCCAAAT 2137 >seq10166 Length=49910 Score = 113 bits (124), Expect = 5e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || || ||||| | || || || || | |||| | | | |||| | || Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACG-TGAA 22378 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || |||| |||||||| ||||||||| ||||||||||||| ||||||| ||||| Sbjct 22379 GGCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGG 22438 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 |||||| || || |||| || || || ||||| || ||||| |||||| ||||||| Sbjct 22439 CAAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCT 22498 Query 40890 GCAT 40893 ||| Sbjct 22499 CCAT 22502 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || ||||| ||||| | || ||||| || | |||| | | | |||||| Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGCT 22092 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| |||||||| || ||||| | |||||||||||| | |||| || |||||| Sbjct 22093 AAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAA 22152 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || || || | ||| || || |||||||||||||||||| ||| |||| || ||| Sbjct 22153 CAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCAT 22212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| ||||||||| | || || ||| | | |||| | | |||| | || Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || | ||| ||||| |||||||| || | ||||| ||||| | |||| || || Sbjct 21799 GCCAAGA-TTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGG 21857 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || || | || || | ||||||||||||||| |||||| | || | Sbjct 21858 TAAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTT 21917 Query 40890 GCATCTAGTGTTGCG 40904 ||| || || ||||| Sbjct 21918 GCACCTGGTCTTGCG 21932 >seq7108 Length=7890 Score = 113 bits (124), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| || || ||| | || || || || |||||| | | |||| | |||| Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACG-TGAAGGC 5237 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| || || ||||| ||||| |||||||||| ||| | |||| || ||||| Sbjct 5238 CAAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAA 5297 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||| |||| ||||||||| ||||||||||||||| || ||| | || ||||| Sbjct 5298 ACAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCA 5357 Query 40893 T 40893 | Sbjct 5358 T 5358 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||||||||| || |||||| | || ||||| | | |||| | | | | ||||| Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | ||||||| ||||| || || ||||| |||| || ||||| | |||| || || Sbjct 4951 GCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGA 5010 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| ||||| |||| || || | |||||||| || ||||||||| |||| || Sbjct 5011 AAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTG 5070 Query 40891 CATCTAGTGTTGCG 40904 ||||| |||||||| Sbjct 5071 CATCTGGTGTTGCG 5084 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || ||||||||| | || || || || | |||| | | | |||| | || Sbjct 5467 CTGACTGGTAAGACCATCACCTTGGAAGTTGAGTCCTCGGACACCATCGACAACG-TGAA 5525 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| || ||||| || | |||||||| || || |||| || || Sbjct 5526 GGCGAAGATACAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTTATCTTTGCTGG 5585 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| || || || |||| || ||||| |||||||||||||| ||||| | || || Sbjct 5586 CAAGCAACTTGAAGACGGCCGTACCCTTGCGGACTACAACATCCAAAAGGAATCTACCCT 5645 Query 40890 GCATCTAGT 40898 || || || Sbjct 5646 CCACCTCGT 5654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515117991628400