Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7108 118 2e-21 seq10166 89.7 8e-13 >seq7108 Length=7890 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124559 ACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAA 124618 ||| || ||||| ||||| || | ||| | || | || || ||| ||| | || Sbjct 4890 ACTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAA 4949 Query 124619 ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGG 124678 |||||||||||| || |||||||| ||||| ||||||||| || | || ||||| || Sbjct 4950 GGCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGG 5009 Query 124679 AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTT 124738 ||||||| | || || | || ||||| | || || |||||||| || || || || || Sbjct 5010 AAAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTT 5069 Query 124739 GCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| |||| || || | || |||||||| Sbjct 5070 GCATCTGGTGTTGCGACTTCGTGGTGGTAT 5099 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || |||||||| || || || || |||||||| | || |||||||| ||||| Sbjct 5821 AAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGAAAG 5880 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| | || || | | ||||| || ||||| ||||||||||| | || Sbjct 5881 CAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTCCAC 5940 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||| | || || || || ||| || Sbjct 5941 TTGGTCTTGCGTCTCCGCGGAGGGATGCAAATTT 5974 >seq10166 Length=49910 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || |||||||| || || || | || ||||| | || || || ||| | ||| Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 || |||||||| || || || || || || || |||||| | | || ||||| || Sbjct 21799 GCCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGGT 21858 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 |||||| | |||||| |||| || || | || || || || ||||| || || || ||| Sbjct 21859 AAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTTG 21918 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||| || || | ||||||||||| Sbjct 21919 CACCTGGTCTTGCGACTTCGAGGTGGTAT 21947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755307600112000