Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7108 134 1e-26 seq10166 107 2e-18 >seq7108 Length=7890 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | ||| |||||||||| ||| || ||||| ||||||||||||||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||||| ||| ||||| || |||||||| | ||||||||||| ||||||||||| Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 118632 ATGCCCTCCTTGTC 118645 |||||||| || || Sbjct 5843 ATGCCCTCTTTATC 5830 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||||||||||||| |||||||| ||| | ||||| || || Sbjct 5363 ACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCC 5304 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || || |||| | |||||||| || ||||| || |||||||| ||| | Sbjct 5303 AACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCTTGA 5244 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | | ||| ||||| | ||| | || ||| Sbjct 5243 ATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTCTTG 5184 Query 118710 CCGGTCA 118716 ||||||| Sbjct 5183 CCGGTCA 5177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| || ||||| |||||||| || | || || || || || || Sbjct 5649 GTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCAAGTTG 5590 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || ||||| |||| ||||||||||| || ||||| ||||| ||||||| |||| || | Sbjct 5589 CTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGT-ATCT 5531 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || | |||| |||||||| | ||| || || | ||| | || || || | Sbjct 5530 TCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTTACCAG 5471 Query 118714 TCAG 118717 |||| Sbjct 5470 TCAG 5467 >seq10166 Length=49910 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| |||| ||| | |||||||| ||||| |||||||| ||| Sbjct 21946 TACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGG 21887 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||| ||||| || || |||| | || || || || |||| Sbjct 21886 CCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAG 21827 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| ||| || |||||| | |||| ||||||| || | Sbjct 21826 GAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAA 21767 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | || ||||| || ||| Sbjct 21766 CTTCCAAGGTGATGGTCTTGCCTGTGAGA 21738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433747309954780