Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7108 91.5 1e-13 >seq7108 Length=7890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||||||||| ||||||||||| | ||| |||| | || Sbjct 6546 AGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCT 6487 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || ||||| | || ||||| ||| || | || |||||||| Sbjct 6486 TCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCT 6427 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| || | ||||||||| |||| ||||||||| Sbjct 6426 TGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTT 6367 Query 34358 TTGCCGGT 34365 || || || Sbjct 6366 TTCCCCGT 6359 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | || ||||||||| |||||||| |||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||| || || |||||||| ||||| || ||| || Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| || || ||||| ||| | || | | || | || | |||||| || Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 |||| |||||||| ||||||||||| Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGTGAG 5758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323010123130400