Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7108 116 3e-21 seq10166 86.0 5e-12 >seq7108 Length=7890 Score = 116 bits (128), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| |||| ||| |||||||||||| |||||||| || | || |||| Sbjct 5081 AACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCCGTCT 5022 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||||||||||||||| || |||||||| ||||| || || || | ||| |||||||| Sbjct 5021 TCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCCTTGTCT 4962 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | ||||| | ||| ||||||| ||| || ||| Sbjct 4961 TGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATAGTC 4902 Query 45305 TTGCCCGTCAGAGTCT 45320 |||||||| |||||| Sbjct 4901 TTGCCCGT--GAGTCT 4888 >seq10166 Length=49910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| | || || |||| ||||| || |||||| || |||||||||||| | Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || |||||||| ||||| || || || || |||||||| ||||| Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| ||| || ||||| | | ||||| | || || Sbjct 21824 ATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACT 21765 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGA 45316 |||| ||| || |||||||| || ||| Sbjct 21764 TCCAAGGTGATGGTCTTGCCTGTGAGA 21738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394999532605015