Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10166 100 2e-16 seq7108 84.2 2e-11 >seq10166 Length=49910 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||||| || |||| ||||| || || ||||| || |||||||||||||| Sbjct 22236 TCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 22177 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||| | ||||||||| ||| |||| | || ||| || || || Sbjct 22176 CAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGG 22117 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | |||||| | ||| ||||||| || |||| Sbjct 22116 GATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGAC 22057 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAAT 18305 ||| | ||||| |||| || |||||| Sbjct 22056 TTCCAAAGTGATCGTTTTTCCTGTCAAT 22029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| ||| |||| || || || || || ||||| || || ||||| || Sbjct 22526 TCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGC 22467 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||||| | ||||||||||||| |||| || | ||| || ||| ||| Sbjct 22466 CAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGG 22407 Query 18218 CACGCCTTCCTTATC 18232 | |||||| || || Sbjct 22406 GATGCCTTCTTTGTC 22392 >seq7108 Length=7890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||||| |||||| || |||||||| |||||||||||||| ||| Sbjct 6561 CCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCC 6502 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| ||||| ||| | || | | ||| ||||| || Sbjct 6501 AGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGG 6442 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 6441 ATGCCTTCCTTGTC 6428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379271345547675