Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6918 109 5e-19 seq7108 87.8 2e-12 seq10166 82.4 7e-11 >seq6918 Length=27162 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| || ||| || ||||| || ||||| || || ||||| || || || || Sbjct 5657 TTCTCAACTCGAGACATGAAGAGATCGGGGATCCAAAGCGCATAGAAAAGATCTCGAGCT 5716 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || ||||| || ||| |||||| | | ||||| |||| || || ||||| ||| Sbjct 5717 CGACTTTCCTCCTTCCCGTGATTCTTTCTTAGGTCCAACCAGTCAAAAACATCCGCGTGC 5776 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || ||||||||||| || || ||||| || || Sbjct 5777 CATGGCTCAAGGTAGATTGCAAAGGCACCAGGTCTCTTATTACCTCCTTGATCAACATAT 5836 Query 23519 CGGGCCGT 23526 || ||||| Sbjct 5837 CGCGCCGT 5844 >seq7108 Length=7890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 ||||| || || || |||||| | || ||||| | || |||| |||| | || || Sbjct 5467 CTGACTGGTAAGACCATCACCTTGGAAGTTGAGTCCTCGGACACCATCGACAACGTGAAG 5526 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || ||| ||||||||||||| | || || |||||||||||||| || || |||||| Sbjct 5527 GCGAAGATACAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTTATCTTTGCTGGC 5586 Query 31334 AAACAGTTGGAAGAC-TCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCT 31392 || || | |||||| | | | || | || || ||||| ||||| ||||| || || Sbjct 5587 AAGCAACTTGAAGACGGCCGTACCCTTGCG-GACTACAACATCCAAAAGGAATCTACCCT 5645 Query 31393 TCATCTGGTACT 31404 || || || || Sbjct 5646 CCACCTCGTTCT 5657 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA-A 31273 |||| || ||||| |||||| | || || ||| |||| |||| | || | || || | Sbjct 6357 TGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGA 6416 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | ||| | |||||||||||| | |||||||| ||||| ||| | || || || ||| Sbjct 6417 CCAAGA-TCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGC 6475 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || || | ||||| || || || || |||||||| |||||||| |||||| Sbjct 6476 AAGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTT 6535 Query 31394 CATCTGGTACT 31404 || ||||||| Sbjct 6536 CACTTGGTACT 6546 >seq10166 Length=49910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/204 (69%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 ||||||| ||||||||||| | || || || | || |||| | | || | ||||| Sbjct 22031 TGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGG 22090 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 | || ||||| ||||| | || || |||||||| || | || || ||||||| Sbjct 22091 CTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCA 22150 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 |||| | ||||| ||| || ||| || ||||| || ||||| || ||||||| Sbjct 22151 AACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTC 22210 Query 31395 ATCTGGTACTTAGACT--GAGGGG 31416 || |||| || |||| |||||| Sbjct 22211 ATTTGGTCCTCCGACTACGAGGGG 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445678834762800