Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7108 107 2e-18 seq10166 93.3 4e-14 >seq7108 Length=7890 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 |||||||| | ||| | || || || | |||||||||||||| ||||| || ||| Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | |||||| || ||| |||||| || ||||| || ||||| Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | |||||||| || ||| || Sbjct 5261 ATCCCCTCCTTATC-TTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAAC 5203 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAAC 139744 ||||| ||| | ||||||||||||||| Sbjct 5202 CTCAAGGGTAATAGTCTTGCCGGTCAAC 5175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | || || ||||| |||||||| |||||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | |||||||| || || |||||| | || ||||| || ||||||||||| Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 139658 ATGCCTTCTTTGTC 139671 ||||| ||||| || Sbjct 5843 ATGCCCTCTTTATC 5830 >seq10166 Length=49910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| || | || || |||| || |||||||| || ||||| || ||| | Sbjct 22235 CCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCC 22176 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | |||||||| ||||| |||||| |||||| |||||||| || ||||| Sbjct 22175 AGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGG 22116 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 22115 ATTCCTTCTTTGTC 22102 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCT 139612 ||| || || | ||| ||||| ||||| || ||||| || || || |||| |||| Sbjct 22508 AACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGT--TCGACCGTCT 22451 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || || ||||| || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 22450 TCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTC- 22392 Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | || | | || | ||||| | || ||| || |||| || | ||| Sbjct 22391 CTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGT 22332 Query 139732 CTTGCCGGT 139740 ||| || || Sbjct 22331 CTTACCAGT 22323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495966554428000