Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6918 102 1e-16 >seq6918 Length=27162 Score = 102 bits (112), Expect = 1e-16 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 71514 AAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAAT 71573 ||| || || ||||||||||| || || ||||| || || | ||| ||| | || || | Sbjct 5034 AAAGGCATCAGCTAATCCTTGTACTCCGATACCAATCGGGCGGTGCCTCATGTTTGACTT 5093 Query 71574 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTAT 71633 | ||| || || | ||||| || || ||||| || ||| |||| ||||| | | | Sbjct 5094 CTTAGCCTCCGGTACCGGATAGTAGTTGATATCGATTATTCTATTCAGATTCCAGGTGAC 5153 Query 71634 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAA-ACACGT 71692 | ||| || || | |||||| |||| || || | ||||| |||| | | || Sbjct 5154 CTCCTTGGTGACTTCATGTAGTTTTTGAAAGTCGTATTTGCCATC---AACAATATAAGT 5210 Query 71693 T--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTAT 71750 | |||||||| ||||| |||||||| ||||| || || | | | | ||||| || Sbjct 5211 TGGCAAGGCAATTGATGCTAGATTACAGACGGCAACTTCGTCGGGGGCAGAATATTCGAT 5270 Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 ||| || |||||||| || | ||||||||||| Sbjct 5271 AATCTCGGTGCAAAGGTTGGAGGATTTGATGGTTCC 5306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671007363093400