Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10166 104 2e-17 seq7108 96.9 3e-15 >seq10166 Length=49910 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| ||||| || |||||||| ||| ||| ||| | | ||||| Sbjct 22217 ACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCATCTTCG 22158 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| ||||| ||||| || |||||||||||||| | Sbjct 22157 AGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGA 22098 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || || || || || ||||| Sbjct 22097 ATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATCGTTTTT 22038 Query 15335 CCTGTCA 15341 ||||||| Sbjct 22037 CCTGTCA 22031 >seq7108 Length=7890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || ||||| || ||||| || | | | | | ||||||| | ||| Sbjct 6239 ATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCAAGTTG 6180 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | || | ||||||||| || ||||| ||||| ||||| ||| || Sbjct 6179 CTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTT 6120 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTTTTACCTG 15338 | |||| || | || |||||||| | || ||| || || | ||| || |||||||||| Sbjct 6119 GGTCTTGACGTTGTCAATGGTATC-CGATGATTCGACCTCAAGGGTGATTGTTTTACCTG 6061 Query 15339 TCAGA 15343 | ||| Sbjct 6060 TGAGA 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362109833062815