Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7108 131 4e-25 seq10166 125 2e-23 >seq7108 Length=7890 Score = 131 bits (144), Expect = 4e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| |||||||||||||| || || || | ||||| | || ||||| ||||| ||||| Sbjct 5934 TGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCC 5875 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||||||| || | ||||||||| ||||| || || ||||||||||| ||||| | || Sbjct 5874 AGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTT 5815 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | ||| || | |||||| || || || || ||||| || || || Sbjct 5814 CACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGTGAG 5758 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || || ||||||||||| ||||||| | || | |||||||| Sbjct 5078 ACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCCGTCTTCC 5019 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| ||||| || | || |||||||| || || || ||||| || || ||| Sbjct 5018 AGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCCTTGTCTTGA 4959 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || ||||| || | ||| || || || ||||| || || |||||||| Sbjct 4958 ATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATAGTCTTG 4899 Query 104531 CCAGTAAGT 104539 || || ||| Sbjct 4898 CCCGTGAGT 4890 Score = 105 bits (116), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | |||||||| || || || || ||||| Sbjct 5675 ATTCCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCC 5616 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||||| ||||| || |||||||| || || | ||| || |||||| Sbjct 5615 GCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGA 5556 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| ||||| || || || || || | ||| || | ||| || Sbjct 5555 GGAATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTC-CGAGGACTC 5497 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || || | || || ||||||||||| || Sbjct 5496 AACTTCCAAGGTGATGGTCTTACCAGTCAG 5467 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | ||| | |||||| ||||| || || || ||||| Sbjct 5384 ATACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCG 5325 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||||| | ||||| || ||||| || | | ||| || || ||| Sbjct 5324 GCGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGA 5265 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| |||||||| || || || || || | || ||| | || Sbjct 5264 GGGATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCA 5205 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || ||||||||||| || || Sbjct 5204 ACCTCAAGGGTAATAGTCTTGCCGGT 5179 >seq10166 Length=49910 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | ||| | || || || || || ||||||||||| Sbjct 22528 ATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCC 22469 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| ||||||||| |||||||| || ||||| || || | || || || || Sbjct 22468 GCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGG 22409 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || || || || | ||| || | || Sbjct 22408 GGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCA 22349 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || || || || || |||||||||||||| Sbjct 22348 ACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 |||||||||| ||| | || || | ||| | || || |||||||| || || ||||| Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| || ||||| |||||||| |||||||| || | | || || || ||| Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||||||||| || |||||||| || || ||||| || Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTC 22078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151166567731220