Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10166 107 2e-18 seq7108 93.3 4e-14 >seq10166 Length=49910 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| |||| | ||| | ||||| || | ||| || || || || | ||| || || Sbjct 22239 CATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTC 22180 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || ||| ||| || || ||||| || ||||||| |||| |||||| ||||| Sbjct 22179 GGCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGG 22120 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| || ||||||||||| | ||| || |||||||| | | | |||||||| | || Sbjct 22119 AGGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTC 22060 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| || | ||||| |||||||| || Sbjct 22059 GACTTCCAAAGTGATCGTTTTTCCTGT 22033 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||| | |||||| |||| |||||| ||||| |||||||| | ||| | Sbjct 21952 TTTGCATACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGT 21893 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || |||||| || ||||| ||| |||||||||| | ||| || | Sbjct 21892 AGTCGGCCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGT 21833 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| || || ||||| | ||| || || || ||| ||| ||||| | Sbjct 21832 CTGGAGGAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAG 21773 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || || | |||||||| || || || ||| Sbjct 21772 ATTCAACTTCCAAGGTGATGGTCTTGCCTGTGAGA 21738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| || | | ||| | ||||| || | || || |||||||| | |||| Sbjct 22533 TTTACATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTAT 22474 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || || ||| | || || || || ||||| || ||||||| | | |||||| Sbjct 22473 AGTCCGCCAGAGT--TCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTG 22416 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || || || || ||||||||||| | ||| || ||||| ||| ||| ||||||| Sbjct 22415 GTCCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGA 22356 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 | || || |||| ||||| || || |||||||| Sbjct 22355 GGACTCAACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 >seq7108 Length=7890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||||||||| ||||| || || ||||| || | || || || || || | Sbjct 5085 TCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCC 5026 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 || ||||| ||||||||| ||||||| || | ||| ||||| || || |||||||| || Sbjct 5025 GTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCCTT 4966 Query 94912 GTCATAAATTTTTGCCTTGAC 94932 ||| | |||||| |||||||| Sbjct 4965 GTCTTGAATTTTCGCCTTGAC 4945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448203138797400