Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2154 122 1e-23 seq11 116 6e-22 seq5519 98.7 2e-16 seq5787 89.7 8e-14 >seq2154 Length=53647 Score = 122 bits (134), Expect = 1e-23 Identities = 106/129 (82%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | ||||| |||||||| || ||||||||||| || ||||||||| Sbjct 41403 GTCATCGTAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCTGCCATCCGTCGT 41461 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || || ||||||||| ||||||| ||| |||| ||||| | ||||| Sbjct 41462 CTTGCTCGTCGAGGAGGCGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAACTCGTGGA 41521 Query 16559 GTTTTGAAG 16567 ||| | ||| Sbjct 41522 GTTCTTAAG 41530 >seq11 Length=9427 Score = 116 bits (128), Expect = 6e-22 Identities = 104/128 (81%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 |||| |||| ||| |||||| |||||||| ||||| ||||||||||| |||||||| | Sbjct 1260 GTCACCGCAAGAT-TCTTCGTGATAACATTCAAGGTATCACCAAGCCTGCTATCCGAAGA 1202 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||||||| ||||| ||||| ||| ||||||| || |||| ||||||| || | Sbjct 1201 CTGGCTCGTCGAGGTGGTGTCAAACGTATCTCTGGCCTGATCTACGAAGAGACCCGAGGA 1142 Query 16559 GTTTTGAA 16566 || ||||| Sbjct 1141 GTATTGAA 1134 >seq5519 Length=46203 Score = 98.7 bits (108), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||||| ||| | | ||||| ||||||||||| ||||||||||| || ||||| || Sbjct 11158 GTCATCGCAAGATTT-TGCGAGACAACATCCAAGGTATCACCAAGCCTGCCATCCGACGA 11216 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || || || | || || |||||||| |||||||| || | || ||||| | |||| | Sbjct 11217 CTTGCACGAAGAGGCGGTGTCAAGCGAATCTCTGGACTGATTTACGAAGAAACCCGTGGT 11276 Query 16559 GTTTTGAA 16566 ||| |||| Sbjct 11277 GTTCTGAA 11284 >seq5787 Length=14991 Score = 89.7 bits (98), Expect = 8e-14 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||||||||| |||||||| || || ||||| | || || ||| Sbjct 2130 AGATCT-TGCGCGATAACATCCAAGGTATCACCAAACCTGCCATCCGAAGACTTGCCCGT 2188 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 || || || |||||||| |||||||| | |||| || |||| ||||| Sbjct 2189 CGAGGCGGCGTCAAGCGCATCTCTGGACTAATCTACGAGGAGACTCGTG 2237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060831665495