Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7108 113 4e-20 seq10166 107 2e-18 >seq7108 Length=7890 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 || || ||| | |||||| | || | |||||| || ||||| || | ||||| Sbjct 6060 ACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAGACC 6119 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||| ||||| || ||||| ||||||||| | ||||||| || |||||| Sbjct 6120 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGGCAAG 6179 Query 26913 CAACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCA 26971 ||||| ||||| | | | | | || ||||| || || ||||| || ||||| | || Sbjct 6180 CAACTTGAAGACGGGCGCA-CTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCTTCA 6238 Query 26972 TCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| | ||| ||||||||| Sbjct 6239 TCTGGTCCTCCGCCTTCGAGGAGGAA 6264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 ||||| | ||| ||||||| |||||||| || | || || ||||| || Sbjct 5773 ATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAGACCAAGATCCAGGAT 5832 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 ||||| || || |||||||||||||| | ||||||| | || || |||||||||||| Sbjct 5833 AAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGAAAGCAACTCGAAGAT 5892 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 | | | | ||| || |||||||| |||||||| || |||| ||||| || | Sbjct 5893 GGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTCCACTTGGTCTTGCGT 5952 Query 26985 CTTAGAGGAGG 26995 || | ||||| Sbjct 5953 CTCCGCGGAGG 5963 >seq10166 Length=49910 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26789 ATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAA 26848 ||| || |||||| ||||||| | ||| | || || ||||| || || | ||||| Sbjct 22029 ATTGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAA 22088 Query 26849 ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGG 26908 |||||| ||||||||||| || ||||| || || ||| || | || | | || Sbjct 22089 GGCTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGG 22148 Query 26909 CAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTAT 26968 ||||||||||||||||| ||| | |||||| ||||| || ||||| || ||| | Sbjct 22149 CAAACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCT 22208 Query 26969 CCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||||| |||| |||| |||| Sbjct 22209 TCATTTGGTCCTCCGACTACGAGGGGGAA 22237 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 |||||| | ||| | ||||| ||||| ||||| | || ||| |||||| ||| Sbjct 21754 ATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAAGCCAAGATTCAAGAC 21813 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || ||||| || |||||| | | || | | ||| ||||||||||| ||| Sbjct 21814 AAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGGTAAACAACTCGAGGAT 21873 Query 26925 GATAGAAACGTCAG-CGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 | | | |||| | |||||| ||||| ||||| || ||||| | || |||||| || | Sbjct 21874 GGTCG-TACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTTGCACCTGGTCTTGCG 21932 Query 26984 ACTTAGAGGAGG 26995 |||| |||| || Sbjct 21933 ACTTCGAGGTGG 21944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || ||||||| | ||| | || || ||||||||||| | || || Sbjct 22323 ACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAGGCC 22382 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||||||||| || || || || || ||| | ||||| | | |||||| Sbjct 22383 AAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGCAAA 22442 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| ||||| | | ||| | |||||||| || ||||| || || || ||||| Sbjct 22443 CAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTCCAT 22502 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || |||| | || |||| Sbjct 22503 TTGGTTCTTCGACTCCGTGGTGGAA 22527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478568372754800