Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6918 84.2 6e-11 >seq6918 Length=27162 Score = 84.2 bits (92), Expect = 6e-11 Identities = 216/329 (66%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 || ||||| ||| || ||||||| || || | |||||| || ||||||||||| Sbjct 5327 AAATCCAATCAGAAGAACCTTGGAACCATCAAATCCTCCAACCTTTGCACCGAGATTATC 5268 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314 ||||| | || |||||||| |||||| ||||| || || || || || | || | Sbjct 5267 GAATATTCTGCCCCCGACGAAGTTGCCGTCTGTAATCTAGCATCAATTGCCTTGCCAACT 5208 Query 364315 TTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 | | | ||||| | | ||| || | || |||| || ||| | | | || Sbjct 5207 TATATTGTTGATGGCAAATACGACTTTCAAAAACTACATGAAGTCACCAAGGAGGTCACC 5148 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 || ||||| | | | ||||| | || || ||||| | || || || || || Sbjct 5147 TGGAATCTGAATAGAATAATCGATATCAACTACTATCCGGTACCGGAGGCTAAGAAGTCA 5088 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || ||| | || |||||||||||| | || ||||| || | ||||| | ||| || Sbjct 5087 AACATGAGGCACCGCCCGATTGGTATCGGAGTACAAGGATTAGCTGATGCCTTTCAAATC 5028 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGC 364523 |||||| || |||| || || ||| ||| Sbjct 5027 CTCAAGCTGCCATTCGAATCAGCTGCCGC 4999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303091171789130