Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10166 93.3 4e-14 seq7108 86.0 5e-12 >seq10166 Length=49910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 24011 ATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAA 24070 ||| || |||||| |||| || | ||||||||| || ||||| || || | ||||| Sbjct 22029 ATTGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAA 22088 Query 24071 ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGG 24130 |||||| ||||||||||| || ||||| || || || || |||| | | || Sbjct 22089 GGCTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGG 22148 Query 24131 CAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAAT 24190 ||| ||||||||||||| ||| | ||| || ||||| || ||||| || || | Sbjct 22149 CAAACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCT 22208 Query 24191 TCATTTAGT 24199 |||||| || Sbjct 22209 TCATTTGGT 22217 >seq7108 Length=7890 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| || ||||| ||||| |||||||||||| Sbjct 5797 GACACCATTGACAATGTGAAGACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAA 5856 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| | || |||||||||||||||| | | | |||||| ||| Sbjct 5857 CAGCGTCTCATTTTTGCTGGAAAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAAC 5916 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| |||||||| ||| | || || || || Sbjct 5917 ATTCAGAAAGAATCAACACTCCACTTGGTCTT 5948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429853655835825