Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6726 136 3e-27 seq7108 107 1e-18 seq10166 91.5 1e-13 seq4817 82.4 5e-11 >seq6726 Length=48881 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 19210 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 19151 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19150 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19116 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 17178 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 17119 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 17118 ACCTATATTTAGCCTTA 17102 >seq7108 Length=7890 Score = 107 bits (118), Expect = 1e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||| ||| | ||| |||||| ||||||||||| |||| Sbjct 5098 TACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAG 5039 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || | ||||||||||||||| || | ||||||||||| | | Sbjct 5038 CCAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTG 4979 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| ||||| ||||| |||||| ||| ||||| Sbjct 4978 GGATACCTTCCTTGTCTTGAATTTTCGCCTTGACATT 4942 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| |||||| || ||||||||| |||||||| |||| |||| || |||| || Sbjct 6244 ACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCA 6185 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | ||| || ||||| || || || ||||||||||| | || | |||||| ||||| Sbjct 6184 AGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTC 6129 >seq10166 Length=49910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| || ||| ||||||||| ||||| || || | || | || |||| || Sbjct 22507 ACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCGACCGTCTTCA 22448 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||| || ||||| || || ||||| || || | ||||| ||||||||||||| | Sbjct 22447 AGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTCCTGA 22388 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || |||||| || | || || || |||||||| | || || || ||| Sbjct 22387 ATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGTCTTA 22328 Query 38289 CCCGTCAAGG 38298 || || |||| Sbjct 22327 CCAGT-AAGG 22319 >seq4817 Length=502 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| |||||||||||||||||| | |||||||||||||| | || || || Sbjct 312 AACCCCATTCCCTTGGCTGTGGTTTTTATGGATAGTAGATAGGGACAGTGAGAAGCTTGT 253 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||| | |||||||| ||||||||||||||||| Sbjct 252 GAATACATTCATGCGTGTCACTAATTAGATGAC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334883048714165