Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6918 96.9 4e-15 seq8339 82.4 1e-10 >seq6918 Length=27162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 63784 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 63843 |||| || | | || || || |||| |||||| |||||||| ||||||||||| ||||| Sbjct 6581 ATAGGTGTAAAGGTCTTCGATGACTTGACTAAAGAGTTTTTTAGTTTCTTTGTGAAGATT 6640 Query 63844 --TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT- 63900 ||||| || || || || |||| | ||| ||||| ||||| | || || || || Sbjct 6641 ACTGATA--GCGATCCTGGCAGCTAAGACGGCGTAATCGGGATGACGAGTGGT-CATGTA 6697 Query 63901 GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCC 63960 || || |||| ||||||| | |||| | ||| ||||| || ||||| || | | ||| Sbjct 6698 CGCGGCAGTTTCCGCTGCCAAATTGTCAAGTTCAACCGTGGTGACACCGTTGAAAACTCC 6757 Query 63961 TTGGATAACCTTC 63973 | ||| || ||| Sbjct 6758 ATTGATGACTTTC 6770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 ||| || || ||||||||||| || || ||||| || || | || ||| | || || | Sbjct 5034 AAAGGCATCAGCTAATCCTTGTACTCCGATACCAATCGGGCGGTGCCTCATGTTTGACTT 5093 Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682 | ||| || || | ||||| || || ||||| || ||| |||| ||||| | | | Sbjct 5094 CTTAGCCTCCGGTACCGGATAGTAGTTGATATCGATTATTCTATTCAGATTCCAGGTGAC 5153 Query 62683 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAA-ACATGT 62741 | ||| || || | ||||| |||| || || ||||| |||| | | || Sbjct 5154 CTCCTTGGTGACTTCATGTAGTTTTTGAAAGTCGTATTTGCCATC---AACAATATAAGT 5210 Query 62742 T--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 | ||| |||| ||||| |||||||| ||||| || || | | | | ||||| || Sbjct 5211 TGGCAAGGCAATTGATGCTAGATTACAGACGGCAACTTCGTCGGGGGCAGAATATTCGAT 5270 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 62835 ||||| |||||||| || | ||||||||||| Sbjct 5271 AATCTCGGTGCAAAGGTTGGAGGATTTGATGGTTCC 5306 >seq8339 Length=4102 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 ||||| || ||| ||||||||| ||||||| | || | || ||||| || || | | Sbjct 1667 CATGCAAAGTCGGTGTGTAGACCTTCGTCTCGAGATATCAGCTCATTGGAGAAGGTCAAT 1726 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || |||||||| || ||||| || ||||| || || || ||||||||||| || Sbjct 1727 CCAGGCATTAGTCCGCGCTTCTTGAGCCAGAAGATTGAAGCAAATGATCCTGA 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633507530914000