Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10166 129 5e-25 seq7108 105 6e-18 >seq10166 Length=49910 Score = 129 bits (142), Expect = 5e-25 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--- 25076 ||||| || ||| | ||||| | ||||| ||||| ||||||||||| || || || Sbjct 22030 TTGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGA--CAATGTCA 22087 Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 | || || | ||| ||||||||||| || || || ||||| || || | || ||||| Sbjct 22088 AGGCTAAGATTCAA-GACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCT 22146 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 ||||||||| | ||||||| || ||| ||| ||| ||||| || || ||||| ||||| Sbjct 22147 GGCAAACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACT 22206 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || || | ||| |||| |||| Sbjct 22207 CTTCATTTGGTCCTCCGACTACGAGGGGGAA 22237 Score = 122 bits (134), Expect = 8e-23 Identities = 144/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC-TGAAG-C 25080 || ||||| | ||||| | ||||| ||||| |||||||| ||||| | || ||||| | Sbjct 22323 ACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGA-TAACGTGAAGGC 22381 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || | ||| ||||||||||| || || || ||||| || || | || ||||| |||| Sbjct 22382 CAAGATTCAG-GACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGCA 22440 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 ||||| | ||||| | ||| ||| ||| || || ||||| ||||| || |||||||| | Sbjct 22441 AACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTCC 22500 Query 25201 ATTTAGTGCT 25210 |||| || || Sbjct 22501 ATTTGGTTCT 22510 >seq7108 Length=7890 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG 25079 ||||| || ||| ||||||| | || || || ||||| ||||| || || ||||| Sbjct 6356 TTGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAG 6415 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 || ||| ||||| ||||| || || || || || || || | |||||||||||| Sbjct 6416 ACCAAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGC 6475 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 || ||| | ||||||| || || ||| || ||||| ||||| ||||||||||| || Sbjct 6476 AAGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTT 6535 Query 25200 CATTTAGTGCT 25210 || || || || Sbjct 6536 CACTTGGTACT 6546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 25035 ATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACT 25091 ||||| | || || ||||| || ||||| || || || || | || |||| ||| Sbjct 4906 ATCACCCTGGAGGTCGAGTCTTCGGACACCATTGA--CAATGTCAAGGCGAAAATTCAA- 4962 Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| || ||||| || ||||| ||| | || |||||||| |||||| | ||| Sbjct 4963 GACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGAAAACAACTGGAA 5022 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || | || || ||| || ||||||||||| || || ||||| | ||| | ||| Sbjct 5023 GACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTGCATCTGGTG 5079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433245006177725