Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8339 109 6e-19 >seq8339 Length=4102 Score = 109 bits (120), Expect = 6e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| |||| |||||||||||| ||||||| ||||||| ||| || || Sbjct 1666 GCATGCAAAGTCGGTGTGTAGACCTTCGTCTCGAGATATCAGCTCATTGGAGAAGGTCAA 1725 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 || || | ||||| || ||||||||||| || ||||||||||| Sbjct 1726 TCCAGGCATTAGTCCGCGCTTCTTGAGCCAGAAGATTGAAGCAAA 1770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||||||||| |||||||| | ||||| | | || ||||| || ||||| Sbjct 2136 AATTTGGAATCCATAGAAACAGCGTGCTTCGGCCACTTGGACTTCGCCGCTGAACCTCTC 2195 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 | || || || ||||| || ||||| ||||| ||||| || || | | || || || Sbjct 2196 AATAAGGTTCTCGTTGACGATGCCATCCGATGCGGCAAAGAAGGCGAGGACGTGTTTGAT 2255 Query 93535 AAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATC 93591 || |||||||| ||| || | || ||||| ||| | ||||| || ||||| Sbjct 2256 GAAGTGTTTCTCGTCAGAGTTCAATTTGTTGTCCCAGTCGTGCATGTCTTTGGAGAGATC 2315 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | |||||| | ||||| || ||||| || || |||||| Sbjct 2316 AATCTCTTCGGCGGTCCAGAAGGATGCCTCGGCGCGTTTGTA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556751411656600