Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7108 114 1e-20 seq10166 98.7 8e-16 >seq7108 Length=7890 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| ||||| ||| | | || ||| | ||| || | || Sbjct 5761 ACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAGACC 5820 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || || ||||| || || ||||||||||| ||||| || ||||| || || Sbjct 5821 AAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGAAAG 5880 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| ||||| | |||||||||||||||| |||||||| || | || Sbjct 5881 CAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTCCAC 5940 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| | |||||||| Sbjct 5941 TTGGTCTTGCGTCTCCGCGGAGG 5963 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | | || ||| | ||| || |||| Sbjct 4894 ACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAGGCG 4953 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||| ||||| ||||| ||||||||||| | || |||||||| ||| Sbjct 4954 AAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGAAAA 5013 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||| || | | || ||||| ||||| || || |||||| | ||| Sbjct 5014 CAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTGCAT 5073 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||||| | || || ||| Sbjct 5074 CTGGTGTTGCGACTTCGTGGTGGT 5097 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| |||| ||||| || ||| | | |||||| | ||| | |||| Sbjct 6060 ACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAGACC 6119 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || ||||| || |||||||||||||| || || |||||||| Sbjct 6120 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGGCAAG 6179 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||||| | | || ||||| || ||||| || || ||| | ||| Sbjct 6180 CAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCTTCAT 6239 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || | || | || ||||| Sbjct 6240 CTGGTCCTCCGCCTTCGAGGAGG 6262 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || ||||| || || | || ||||| || || || |||| || | ||| | | || Sbjct 5176 TTGACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAG 5235 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || |||||||| |||||||| || || || || || || || | || ||||| ||| Sbjct 5236 GCCAAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGC 5295 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 |||||||| || || ||||||| || |||| |||||||| |||||||| || || | Sbjct 5296 AAACAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTG 5355 Query 22420 CATTTAGT 22427 ||||| || Sbjct 5356 CATTTGGT 5363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || ||||| |||| || || || ||| | | || || | ||| | | || Sbjct 6356 TTGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAG 6415 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || ||||||||||| || || || |||||||| |||||| | || ||||||||| Sbjct 6416 ACCAAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGC 6475 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || || | || ||| ||| ||| | | || ||||||||||| ||||||||||| Sbjct 6476 AAGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCAC 6531 >seq10166 Length=49910 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| ||||| || || |||||||| | || |||||||| ||| Sbjct 21802 AAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGGTAAA 21861 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| || || | |||| |||||||| ||||| || || ||| | || Sbjct 21862 CAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTTGCAC 21921 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||||| | || || ||| Sbjct 21922 CTGGTCTTGCGACTTCGAGGTGGT 21945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || |||||| ||||| | ||||| || || | || || | ||| || |||| Sbjct 22030 TTGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAG 22089 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || ||||||||||| || || || || || || || ||||| | || ||||| ||| Sbjct 22090 GCTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGC 22149 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 ||||| | || ||| || || | |||| |||||||| || ||||| ||||| | Sbjct 22150 AAACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTT 22209 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || | ||| | || || || Sbjct 22210 CATTTGGTCCTCCGACTACGAGGGGG 22235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| ||| ||||||||||||| || || | || ||| | || | | || Sbjct 22323 ACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAGGCC 22382 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||| || || || || || || || |||||||| || ||||| |||||| Sbjct 22383 AAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGCAAA 22442 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || || || | | || || || || ||||| || ||||| | ||| Sbjct 22443 CAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTCCAT 22502 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | || || || Sbjct 22503 TTGGTTCTTCGACTCCGTGGTGG 22525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419647610938975