Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7108 163 5e-35 seq10166 156 8e-33 >seq7108 Length=7890 Score = 163 bits (180), Expect = 5e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| |||||||| | |||| || || || ||||| |||||||| || || || | Sbjct 6264 TTCCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG 6205 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || | ||| ||||| | ||||| |||||||| ||||| | |||||| || || | Sbjct 6204 CCAAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAG 6145 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||||||||||||||||||||| | ||||||| || ||||| || | |||||| | Sbjct 6144 GAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGA 6085 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 | || | |||||| ||||| || ||||| Sbjct 6084 CCTCAAGGGTGATTGTTTTACCTGTGAG 6057 Score = 152 bits (168), Expect = 9e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || ||||| |||||||| || || || ||||| || ||||| ||||||| Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||||| || || || ||||| | ||||| ||||| || Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || || || ||||| | ||| || || |||||||| | ||||||||| Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||| |||||||| || || |||||| Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGTGAGG 5757 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||||||| || ||||| ||||| || ||||| || || | Sbjct 6561 CCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCC 6502 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| ||||| || || | | ||| || ||||| || Sbjct 6501 AGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGG 6442 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| | ||| ||| || || ||||| | ||||| || Sbjct 6441 ATGCCTTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACC 6382 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 |||| |||||||||||| ||||| Sbjct 6381 TCCAGGGTGATGGTTTTCCCCGT 6359 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | || | ||| || || || || ||||||||||| || || | Sbjct 5674 TTCCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCG 5615 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||| | ||||| || || || || || | || ||||| || | Sbjct 5614 CAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAG 5555 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||||||||| || ||||| ||||| ||| ||||||||||| | || || | Sbjct 5554 GAATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAA 5495 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||||||||||||| || || || ||| Sbjct 5494 CTTCCAAGGTGATGGTCTTACCAGTCAGG 5466 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||| || | |||||||| || || || || || || | Sbjct 5096 CCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCC 5037 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| | || || ||||| || || | | |||||| || ||||| Sbjct 5036 AATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGG 4977 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || |||||||| || |||||||| | || || || Sbjct 4976 ATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACC 4917 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 |||| |||||| || || |||||||| Sbjct 4916 TCCAGGGTGATAGTCTTGCCCGTGAG 4891 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || || ||||||||||||||||| || |||| | Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| ||||| || || || || || | || || ||||| || || Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| ||||| ||| ||||| ||||| | || || || Sbjct 5261 ATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACC 5202 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| || || || || || Sbjct 5201 TCAAGGGTAATAGTCTTGCCGGT 5179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | ||||||||| || || ||||| ||||||||||| ||||| | |||||| Sbjct 4630 ATCAGACGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTGACATTA 4571 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||| ||||| | || || |||||||| |||||||| || || ||||| Sbjct 4570 TCGATAGTGTCGGAGGACTCGACTTCCAAAGTGATGGTCTTGCCGGTGAG 4521 >seq10166 Length=49910 Score = 156 bits (172), Expect = 8e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||| ||| | || ||||| ||||||||||| || |||| Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | || || ||||| || || | | ||||||||| || ||| Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| || || ||| ||||| ||||| | ||||| ||| Sbjct 21824 ATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACT 21765 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 |||||||||||||| || || ||||| Sbjct 21764 TCCAAGGTGATGGTCTTGCCTGTGAG 21739 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | ||||| || || ||||||||||| |||||||| || |||| Sbjct 22237 TTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 22178 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | ||||||||| | || || || || || || | || ||| ||||| || | Sbjct 22177 CCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAG 22118 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| |||||||||||||| |||||||| || || ||||| | || || | Sbjct 22117 GGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGA 22058 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||| ||||| |||||||| || Sbjct 22057 CTTCCAAAGTGATCGTTTTTCCTGT 22033 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| |||| || || || || | ||||| || ||||||||||| |||||||| |||| Sbjct 22533 TTTACATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTAT 22474 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || | || || | || ||||| | || || || || || ||||| | ||| |||| Sbjct 22473 AGTCCGCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGT 22414 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || |||||||| ||||| |||||||| ||||| ||| ||||||||||| | | Sbjct 22413 CCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGG 22354 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 | || ||||| | ||||| || || || || ||| Sbjct 22353 ACTCAACTTCAAGAGTGATCGTCTTACCAGTAAGG 22319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921441358799800