Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10166 96.9 2e-15 seq7108 89.7 4e-13 >seq10166 Length=49910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 21854 ATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAA 21913 ||| || || ||||| || || ||||| || || | || || | | | || | || Sbjct 22029 ATTGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAA 22088 Query 21914 GCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGG 21973 | || ||| || ||||| || | ||| | |||| || || | ||||||||||| Sbjct 22089 GGCTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGG 22148 Query 21974 CAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCT 22033 ||||||||| |||||| |||| ||||||| ||||| || ||||| || || ||||| Sbjct 22149 CAAACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCT 22208 Query 22034 TCATATGGTATTACGTTTACGAGGAGGA 22061 |||| |||| | || ||||||| ||| Sbjct 22209 TCATTTGGTCCTCCGACTACGAGGGGGA 22236 >seq7108 Length=7890 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||||||||| | ||| | |||||| | || || |||||||| || ||||| ||| Sbjct 5830 GATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGAAAGCAACTCGAA 5889 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| ||||||||||||| |||||||| ||||| || || || |||| || Sbjct 5890 GATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTCCACTTGGTCTTG 5949 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 5950 CGTCTCCGCGGAGG 5963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358056209588110