Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7108 116 3e-21 seq10166 113 4e-20 >seq7108 Length=7890 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || || || | || |||||||| ||||||||||||||| Sbjct 5966 ATCCCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCG 5907 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| ||||| || ||||| | |||||||||||||| || ||| Sbjct 5906 GCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGA 5847 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| ||||| || ||||| || | | |||| |||||| | ||||| Sbjct 5846 GGGATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCT 5787 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || |||| || | || |||||||| || Sbjct 5786 ACTTCCAGAGTGATGGTCTTGCCGGTGAG 5758 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| || ||||| || || ||| || ||||||||||| || || Sbjct 6232 GTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCAAGTTGCTTGCCG 6173 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | |||||||| ||||| ||||||||||||||||| ||||| |||||| || Sbjct 6172 GCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTG 6113 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 | | |||| ||| || | |||||||| || | ||| | ||||| || || ||| Sbjct 6112 ACGTTGTCAATGGTATCCGATGATTCGACCTCAAGGGTGATTGTTTTACCTGTGAGA 6056 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | |||||||| ||||| |||||||| || Sbjct 5675 ATTCCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCC 5616 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||||| || ||||| |||| |||||||| ||||| ||| Sbjct 5615 GCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGA 5556 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | ||| || Sbjct 5555 GGAATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCA 5496 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || |||| ||| | || || || ||||| Sbjct 5495 ACTTCCAAGGTGATGGTCTTACCAGTCAG 5467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| ||||||||||| || || ||||| |||||||||||| || || Sbjct 6531 GTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTGCTTGCCG 6472 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| || || || || || |||||||| ||||| ||||| || Sbjct 6471 GCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTC 6412 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | | |||| ||||| | |||||||| |||| ||| | ||||| || |||| Sbjct 6411 ACGTTGTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGTCA 6357 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | || ||||| | ||||| |||||||| |||||||| ||| Sbjct 5384 ATACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCG 5325 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| | ||||| || || |||| | ||||| ||||||||| Sbjct 5324 GCGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGA 5265 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | || | ||||||| ||| || Sbjct 5264 GGGATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCA 5205 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | ||| | || |||||||||| Sbjct 5204 ACCTCAAGGGTAATAGTCTTGCCGGTCA 5177 >seq10166 Length=49910 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| ||| || | || | ||||| || ||||| |||||||| ||| Sbjct 21947 ATACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCG 21888 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| || ||||||||||| || |||| | || |||||||| ||| Sbjct 21887 GCCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGA 21828 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| ||| | | || | ||||| | ||||| Sbjct 21827 GGAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCA 21768 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 || |||| ||| | || ||||| || ||| Sbjct 21767 ACTTCCAAGGTGATGGTCTTGCCTGTGAGA 21738 Score = 113 bits (124), Expect = 4e-20 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 114141 TACCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGA 114200 ||| ||||||| | || ||||| |||| | ||| ||||| | ||| || || ||||| Sbjct 22538 TACAATTTACA--TTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGG 22481 Query 114201 ATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGC 114260 || || || || || ||| ||| |||||||||||||| || || |||||||||| Sbjct 22480 ATATTATAGTCCGCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGT 22421 Query 114261 TGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTG 114320 || |||||||| || |||||||||||||| |||||| || | | || | |||| Sbjct 22420 TGCTGGTCCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTG 22361 Query 114321 TCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || | ||| || || || | || | ||| || || || || Sbjct 22360 TCAGAGGACTCAACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||||| | || ||||| | || || ||||| || |||||||| ||| Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| |||||||| ||||| |||| | || || ||||| ||| Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| || | | |||| ||||| | ||| ||| Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCG 22059 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || |||| || | |||||| || |||| Sbjct 22058 ACTTCCAAAGTGATCGTTTTTCCTGTCA 22031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420053933102580