Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10166 143 6e-29 seq7108 120 7e-22 >seq10166 Length=49910 Score = 143 bits (158), Expect = 6e-29 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 288224 GGGATATGATGATTCA---TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGC 288280 ||| ||| ||||| || ||||| |||||| ||||||| ||| || | ||| | |||| Sbjct 22550 GGGCTATAATGATACAATTTACAT-TCCACCACGGAGTCGAAGAACCAAATGGAGCGTGG 22492 Query 288281 TTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGA 288340 || ||||||||||||||||| || || || || |||||||| | |||||| || || | Sbjct 22491 ACTCCTTTTGGATATTATAGTCCGCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAA 22432 Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||| ||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 22431 AGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGT 22372 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 | || || | || || || ||||| || ||||||||||| || || || Sbjct 22371 TATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || | ||||| ||| ||||| ||||| || |||||||| Sbjct 22236 TCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 22177 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | |||||| || || ||||||| || || || ||||| Sbjct 22176 CAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGG---TCTGG 22120 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| || || || || || || || || || |||| || || || Sbjct 22119 AGGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTC 22060 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| | |||||||| || || |||| Sbjct 22059 GACTTCCAAAGTGATCGTTTTTCCTGTCA 22031 >seq7108 Length=7890 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || || ||||| || ||||| || ||||| | ||| ||||| || || Sbjct 5928 TTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAA 5869 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || |||||||||||| ||||| || |||||||||||||| || | ||||| || Sbjct 5868 AATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTCACATT 5809 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || | || |||||||||||| || ||||| ||||| ||||| || Sbjct 5808 GTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGTGAG 5758 Score = 118 bits (130), Expect = 3e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | ||| | || ||||||||||| || ||||||||| Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| || ||||| ||||| ||||||| ||||| || ||| Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| || || || || |||||||| || || | ||| || || || Sbjct 5261 ATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACC 5202 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 || || || || ||||| ||||||| Sbjct 5201 TCAAGGGTAATAGTCTTGCCGGTCA 5177 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| || || ||||||||||| ||||| || Sbjct 6263 TCCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGC 6204 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| |||||||| | ||| || || ||||| || ||||| |||||| || Sbjct 6203 CAAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGG 6144 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || || | || ||||| || || | ||| ||||| || Sbjct 6143 AATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGAC 6084 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || || || || ||| Sbjct 6083 CTCAAGGGTGATTGTTTTACCTGTGAGA 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179416878429770