Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7108 113 5e-20 seq10166 93.3 4e-14 >seq7108 Length=7890 Score = 113 bits (124), Expect = 5e-20 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| |||||||||||||| || | |||||| | ||||| || ||||| || Sbjct 5933 GTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCA 5874 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| ||||| || |||||||| || || ||||| || || || || ||| Sbjct 5873 GCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTC 5814 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || | || | ||| || || ||||| | ||| | |||||||||||| Sbjct 5813 ACATTGTCAATGGTGT--CCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGT 5761 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || || | ||| || |||||||||| |||||||| Sbjct 5642 GTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCA 5583 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || || ||||||||||| |||||||| ||||| || || ||||| || Sbjct 5582 GCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGTATCTT 5530 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || ||||| || ||||| || || | |||||| ||||| Sbjct 6247 AGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCT 6188 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| ||||||| || || || || |||||||| ||||| || ||| Sbjct 6187 TCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCT 6128 Query 64352 TGTATTTT 64359 || || || Sbjct 6127 TGAATCTT 6120 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || | ||| | || || |||||||| |||||||| || || Sbjct 5382 ACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGC 5323 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| ||||||| | ||| ||||| ||| | || | ||||||||||| ||||| Sbjct 5322 GAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGG 5263 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | ||| || || || || Sbjct 5262 GATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAAC 5203 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAA 64422 || | || | |||||||||||||| Sbjct 5202 CTCAAGGGTAATAGTCTTGCCGGTCAA 5176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| ||||||||||| || || | ||| || | |||||||| ||| Sbjct 6537 TGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTGC 6478 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||||||| |||| | || ||||| ||||| || || ||||| || ||||| || || Sbjct 6477 TTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTT 6419 >seq10166 Length=49910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || ||||| || |||||||| || || | || ||| | ||| Sbjct 22220 AGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCATCT 22161 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || ||||| ||| | || | || |||||||| ||||| ||||||||||| ||| Sbjct 22160 TCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTGTCT 22101 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| || || ||||| | ||| | || Sbjct 22100 TGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATCGTT 22041 Query 64412 TTGCCGGTCAA 64422 || || ||||| Sbjct 22040 TTTCCTGTCAA 22030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499546651024600