Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10166 104 2e-17 seq7108 87.8 2e-12 >seq10166 Length=49910 Score = 104 bits (114), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| || | || | | | ||||||||||| |||||||||||| | Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||||||||||||| | |||||| || |||||||| ||||| Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 || || || ||||| ||| | || | ||||| Sbjct 21824 ATGCCCTCCTTGTC-TTGAATCTTGGCTTTAA 21794 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||| | | ||||||||||| || || ||||| || ||| || ||| || Sbjct 22508 AACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCGACCGTCTTC 22449 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 |||||||| || | | |||| ||||| || |||||||| || || ||||||||||| | Sbjct 22448 AAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTC-CT 22390 Query 138525 GATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | || | | || | |||||| | ||||| || || | || | ||| | Sbjct 22389 GAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGTCT 22330 Query 138584 TACCAGTCAG 138593 ||||||| || Sbjct 22329 TACCAGTAAG 22320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | || ||||| | | ||||| || || |||||||||||| | Sbjct 22235 CCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCC 22176 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| || ||||||||||| || | | |||| | || || ||||| ||||| Sbjct 22175 AGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGG 22116 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || |||| || | ||||| | ||||| | Sbjct 22115 ATTCCTTCTTTGTC-TTGAATCTTAGCCTTGACATTG-TCAATAGTGTCAGAGGACTCGA 22058 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | || | |||||| || |||| Sbjct 22057 CTTCCAAAGTGATCGTTTTTCCTGTCA 22031 >seq7108 Length=7890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | || | ||| | | | ||||||||||| || |||||||| | Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||| || ||||| || |||| | || ||||| ||||| |||||||| Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || || | ||| || | ||| || | || || | Sbjct 6142 ATGCCTTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCAATGGTATCCGATGATTCGA 6085 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 |||| | || | |||||||| || ||| Sbjct 6084 CCTCAAGGGTGATTGTTTTACCTGTGAGA 6056 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | || |||||||| ||||||||||| Sbjct 5672 CCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCA 5613 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || ||||| || || | | |||| |||||||| ||||| ||||| Sbjct 5612 AGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGA 5553 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || | || | ||| || | |||||| | ||||| | Sbjct 5552 ATGCCTTCCTTGTC-CTGTATCTTCGCCTTCACGTTG-TCGATGGTGTCCGAGGACTCAA 5495 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAG 138593 | || | || | || ||||||||||| Sbjct 5494 CTTCCAAGGTGATGGTCTTACCAGTCAG 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496164915454800