Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7108 93.3 3e-14 seq10166 91.5 1e-13 >seq7108 Length=7890 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||||||| || ||||| || ||||| || | | | | | ||||||| | ||| Sbjct 6239 ATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCAAGTTG 6180 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | || | ||| ||||| || ||||| ||||||||||| ||| || Sbjct 6179 CTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTT 6120 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | | || || | || || ||||| | || ||| || || | ||| || |||||||||| Sbjct 6119 GGTCTTGACGTTGTCAATGGTATC-CGATGATTCGACCTCAAGGGTGATTGTTTTACCTG 6061 Query 15152 TCAGA 15156 | ||| Sbjct 6060 TGAGA 6056 >seq10166 Length=49910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | || | || |||||||| || || ||||| || |||||||| ||| Sbjct 22235 CCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCC 22176 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | | ||||| | |||||||||||| | ||||| || || ||||| || Sbjct 22175 AGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGG 22116 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| || || ||| | || ||||| || || || Sbjct 22115 ATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACT 22056 Query 15130 TCTAAGGTAATGGTTTTACCTGTCA 15154 || || || || ||||| ||||||| Sbjct 22055 TCCAAAGTGATCGTTTTTCCTGTCA 22031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357323549938775