Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7108 111 1e-19 seq10166 105 6e-18 >seq7108 Length=7890 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| ||| | || ||||| || ||||||||||| || || Sbjct 5096 CCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCC 5037 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || |||||||| || ||||||| || || ||||| || || Sbjct 5036 AATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGG 4977 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| |||||| ||||| | || | |||||||| | |||||| Sbjct 4976 ATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACC 4917 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAG 127092 || | ||| | || ||||| || || Sbjct 4916 TCCAGGGTGATAGTCTTGCCCGTGAG 4891 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||||| ||||| || | || || ||||| ||||| ||||||||| || Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || |||||||| | || | ||||| ||||||||||| Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||| || ||| ||| || ||| | | || | |||||||| || ||| Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAG 127092 || | || | || |||||||| || Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGTGAG 5758 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | |||||||||||||| || ||||| ||| | | ||||| || || Sbjct 5363 ACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCC 5304 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||| || || |||||||||||||||| || ||||| || |||||||| || Sbjct 5303 AACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCTTGA 5244 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | |||| |||| ||||| | ||| || || | ||| | || || Sbjct 5243 ATCTTGGCCTTCACGTTG-TCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTCTT 5185 Query 127084 GCCGGTCA 127091 |||||||| Sbjct 5184 GCCGGTCA 5177 >seq10166 Length=49910 Score = 105 bits (116), Expect = 6e-18 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| |||| || | |||||||| ||||| || ||||| ||| || Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || || ||||| || || |||| || || || || || ||||| Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||| | ||| | | |||| | ||| |||| ||||||| | || | Sbjct 21824 ATGCCCTCCTTGT-CTTGAATCTTGGCTTTAACGTT-ATCGATCGTGTCCGAAGATTCAA 21767 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||| | || ||||| || ||| Sbjct 21766 CTTCCAAGGTGATGGTCTTGCCTGTGAGA 21738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475407393811600