Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10166 102 7e-17 seq7108 100 3e-16 >seq10166 Length=49910 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || | ||| ||||| || ||||||||||||||||| || Sbjct 22528 ATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCC 22469 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | |||||| || || | || | |||||||||||||| Sbjct 22468 GCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGG 22409 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||||||||| || ||||| || || | || | || | |||||| || ||||| Sbjct 22408 GGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCA-CGTTATCGATGGTGTCAGAGGACTC 22350 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||||| ||||| | ||| || || || || Sbjct 22349 AACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || | ||| || || || || || ||||| || || ||| Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || || | ||||||||||||||||| || Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| |||||||| || |||| || | ||||| || |||||| Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCG 22059 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| | ||| | |||||| || || Sbjct 22058 ACTTCCAAAGTGATCGTTTTTCCTGT 22033 >seq7108 Length=7890 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | |||||| || || || |||||||| || || ||| Sbjct 5384 ATACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCG 5325 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||||| ||||| ||||| | |||||||| ||||||||||| Sbjct 5324 GCGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGA 5265 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || ||||||||||| || || | || | || | |||||||| ||||| Sbjct 5264 GGGATCCCCTCCTTATCTTGAATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGACTC 5206 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || || |||| || |||||||| Sbjct 5205 AACCTCAAGGGTAATAGTCTTGCCGGT 5179 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| ||||||| || || ||||| || ||||| || || Sbjct 5099 ATACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCA 5040 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| ||||||||| || | ||||| ||||| || ||||| Sbjct 5039 GCCAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGT 4980 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||||||||| |||| || | |||||| ||||||||| Sbjct 4979 GGGATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCG 4920 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || || || || | || ||||| || || Sbjct 4919 ACCTCCAGGGTGATAGTCTTGCCCGTGAG 4891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451914409621400